Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3856 | ATGGCTACTAAGGACTCGAGTTCTGGCACTGAGGGCAAGATTAAAGGGGCTCTCACTCATGGCGGCCGTTATGTGCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCGGCTAAGTATGTTCCTCCTTTGCGGCCCATTGGTAGAGGGGCTTATGGTCTTGTTTGCGCTGCTGTTAATTCAGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCATTTGATAACATAATCGATGCTAAGAGGACATTGAGAGAAATTAAACTTCTTTGTCACATGGAACATGAAAATATTATTGCTATCCGAGACATCATTCGGCCGCCAAAAAGGGAGGTTTTTAATGATGTGTATATTGTTTACGAGTTGATGGATACTGACCTTCATCAAATTATTCGTTCTGACCAACAACTGACAGATGATCATTGCCAGTACTTTTTGTATCAGTTATTGCGTGGGCTGAAATATGTGCATTCAGCCAAGGTCCTGCACCGCGATCTCAAGCCAAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGAGATTTTGGATTGGCAAGGACGACTTCTGAAACCGACTTCATGACTGAATATGTGGTCACTCGCTGGTACCGAGCACCGGAATTGCTTCTCAATTGTTCAGAGTACACTGCTGCTATTGATGTTTGGTCTGTTGGATGCATACTTGGTGAGATCATGACCAGAGAGCCTCTCTTCCCTGGAAAAGATTATGTTCATCAACTCAGACTCATAACTGAGCTACTAGGATCACCAGATGATGCCAGCCTAGGATTTCTCCGAAGCGACAACGCTCGAAGATATGTCAAGCAGCTTCCACAGTACAGGAAGCAACAATTCTCAACTAGATTTCCCAACATGTCTCCAGCTGCCCTAGATCTTCTAGAAAAGATGCTCGTATTCGATCCCAACAAACGCATTACAGTGGAGGAGGCACTTTGTCACCCATACTTGAAGTCTCTCCACGACATCAACGACGAGCCAGTCTGTGCCAGACCTTTCAATTTTGATTTCGAGCAACCATCGTGCACTGAAGAGCATATCAAAGAACTCATCTGGAAAGAAACTACCCGGTTCAATCCCGACGAATCAGCAAGGAGAACGACTCTTTGCGTTTGA | 1146 | 44.15 | MATKDSSSGTEGKIKGALTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQQLTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSTRFPNMSPAALDLLEKMLVFDPNKRITVEEALCHPYLKSLHDINDEPVCARPFNFDFEQPSCTEEHIKELIWKETTRFNPDESARRTTLCV | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 67813320 | 67819276 | + | Sed0010730.1 | Sed01g3856 | 703160 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3856 | 381 | ProSiteProfiles | Protein kinase domain profile. | 41 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3856 | 381 | FunFam | Mitogen-activated protein kinase | 26 | 135 | - | - | |
Sed01g3856 | 381 | ProSitePatterns | Protein kinases ATP-binding region signature. | 47 | 71 | IPR017441 | GO:0005524(InterPro) | |
Sed01g3856 | 381 | Gene3D | Phosphorylase Kinase; domain 1 | 24 | 364 | - | - | |
Sed01g3856 | 381 | SUPERFAMILY | Protein kinase-like (PK-like) | 44 | 335 | IPR011009 | - | |
Sed01g3856 | 381 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 163 | 175 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3856 | 381 | CDD | STKc_TEY_MAPK | 34 | 370 | - | - | |
Sed01g3856 | 381 | FunFam | Mitogen-activated protein kinase | 125 | 354 | - | - | |
Sed01g3856 | 381 | ProSitePatterns | MAP kinase signature. | 76 | 179 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3856 | 381 | SMART | serkin_6 | 41 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3856 | 381 | Pfam | Protein kinase domain | 45 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3856 | 381 | Gene3D | Transferase(Phosphotransferase) domain 1 | 125 | 354 | - | - | |
Sed01g3856 | 381 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 34 | 364 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1023 | Sed-Chr1:7594925 | Sed01g3856 | Sed-Chr1:67813320 | 4.30E-119 | dispersed | |
Sed01g3856 | Sed-Chr1:67813320 | Sed09g0034 | Sed-Chr9:288220 | 7.10E-184 | dispersed | |
Sed01g3856 | Sed-Chr1:67813320 | Sed05g0755 | Sed-Chr5:5911782 | 2.50E-221 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78744 | PF00069 | Pkinase | 5.80E-71 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3856 | K20600 | - | csv:101214254 | 760.37 |