Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3856 ATGGCTACTAAGGACTCGAGTTCTGGCACTGAGGGCAAGATTAAAGGGGCTCTCACTCATGGCGGCCGTTATGTGCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCGGCTAAGTATGTTCCTCCTTTGCGGCCCATTGGTAGAGGGGCTTATGGTCTTGTTTGCGCTGCTGTTAATTCAGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCATTTGATAACATAATCGATGCTAAGAGGACATTGAGAGAAATTAAACTTCTTTGTCACATGGAACATGAAAATATTATTGCTATCCGAGACATCATTCGGCCGCCAAAAAGGGAGGTTTTTAATGATGTGTATATTGTTTACGAGTTGATGGATACTGACCTTCATCAAATTATTCGTTCTGACCAACAACTGACAGATGATCATTGCCAGTACTTTTTGTATCAGTTATTGCGTGGGCTGAAATATGTGCATTCAGCCAAGGTCCTGCACCGCGATCTCAAGCCAAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGAGATTTTGGATTGGCAAGGACGACTTCTGAAACCGACTTCATGACTGAATATGTGGTCACTCGCTGGTACCGAGCACCGGAATTGCTTCTCAATTGTTCAGAGTACACTGCTGCTATTGATGTTTGGTCTGTTGGATGCATACTTGGTGAGATCATGACCAGAGAGCCTCTCTTCCCTGGAAAAGATTATGTTCATCAACTCAGACTCATAACTGAGCTACTAGGATCACCAGATGATGCCAGCCTAGGATTTCTCCGAAGCGACAACGCTCGAAGATATGTCAAGCAGCTTCCACAGTACAGGAAGCAACAATTCTCAACTAGATTTCCCAACATGTCTCCAGCTGCCCTAGATCTTCTAGAAAAGATGCTCGTATTCGATCCCAACAAACGCATTACAGTGGAGGAGGCACTTTGTCACCCATACTTGAAGTCTCTCCACGACATCAACGACGAGCCAGTCTGTGCCAGACCTTTCAATTTTGATTTCGAGCAACCATCGTGCACTGAAGAGCATATCAAAGAACTCATCTGGAAAGAAACTACCCGGTTCAATCCCGACGAATCAGCAAGGAGAACGACTCTTTGCGTTTGA 1146 44.15 MATKDSSSGTEGKIKGALTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQQLTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSTRFPNMSPAALDLLEKMLVFDPNKRITVEEALCHPYLKSLHDINDEPVCARPFNFDFEQPSCTEEHIKELIWKETTRFNPDESARRTTLCV 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67813320 67819276 + Sed0010730.1 Sed01g3856 703160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3856 381 ProSiteProfiles Protein kinase domain profile. 41 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3856 381 FunFam Mitogen-activated protein kinase 26 135 - -
Sed01g3856 381 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524(InterPro)
Sed01g3856 381 Gene3D Phosphorylase Kinase; domain 1 24 364 - -
Sed01g3856 381 SUPERFAMILY Protein kinase-like (PK-like) 44 335 IPR011009 -
Sed01g3856 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3856 381 CDD STKc_TEY_MAPK 34 370 - -
Sed01g3856 381 FunFam Mitogen-activated protein kinase 125 354 - -
Sed01g3856 381 ProSitePatterns MAP kinase signature. 76 179 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3856 381 SMART serkin_6 41 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3856 381 Pfam Protein kinase domain 45 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3856 381 Gene3D Transferase(Phosphotransferase) domain 1 125 354 - -
Sed01g3856 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 34 364 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1023 Sed-Chr1:7594925 Sed01g3856 Sed-Chr1:67813320 4.30E-119 dispersed
Sed01g3856 Sed-Chr1:67813320 Sed09g0034 Sed-Chr9:288220 7.10E-184 dispersed
Sed01g3856 Sed-Chr1:67813320 Sed05g0755 Sed-Chr5:5911782 2.50E-221 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78744 PF00069 Pkinase 5.80E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3856 K20600 - csv:101214254 760.37