Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3857 ATGGGGACCGTTGCCGCCGCCGTTCCGTGCCGGTTTAATTGCCGGAGTCTCCTTCCGGTGGTCGGAGACCGGCCGGGGTTGGGTTTTCCGAACCGGGTTCCGTGGCGGTTCTGTTCGAAACAGAGGACGAGAATTTTGACGGCGGCGAAGAAAAAAAACAGAGCTGATGAAAATGGGTTTGGTGGAGTTGAAATTGTTGAGGATTTGGAGAAGAAAATGGAGAGGAAGAAAGGGGAAAGAGATGCCTATTTTGTTGCTGCAATTGTTTCGAGCTTTGGAATCACGTCCATGGCTGCCATCGCTGTTTATTACAGATTCTCTTGGCAAACAGGGGGTGGAGAGTTTCCAATTATGGAAATGTTTGGCACATTCGCTCTATCGGTGGGATCAGCTGTGGGGATGGAATTCTGGGCGAGATGGGCTCACAAACAGCTCTGGCATGCAACCTTATGGCATATGCACCAGTCTCATCATAGGCCGAGGAATGGGATGTTTGAAATGAACGATGTGTTTGCGATAATAAACGCAGTTCCCGCAATTGCTCTTCTTTCCTTTGGGCTCTTCAATCAAGGCTTCTTTTCCGGCCTCTGTTTTGGTGCTGGTTTGGGAATTACGGTTTTTGGAATTGCCTACATGTTCGTCCACGATGGCCTCGTGCACCGTCGTTTCCCAGTGGGCCCCATTGCCACCGTCCCTTATTTGCGACGTGTCGCTGCCGCCCATCATCTTCATCACACGGACAAATTCGACGGAGTCCCTTATGGATTGTTTTTAGGACCCAAGGAATTGGAAGATGTCAATGGTGAAGAAGAGTTGCAGAAGGAAATTATAAAGAGAAGCAAGGTTTACAGCAATTAA 858 49.07 MGTVAAAVPCRFNCRSLLPVVGDRPGLGFPNRVPWRFCSKQRTRILTAAKKKNRADENGFGGVEIVEDLEKKMERKKGERDAYFVAAIVSSFGITSMAAIAVYYRFSWQTGGGEFPIMEMFGTFALSVGSAVGMEFWARWAHKQLWHATLWHMHQSHHRPRNGMFEMNDVFAIINAVPAIALLSFGLFNQGFFSGLCFGAGLGITVFGIAYMFVHDGLVHRRFPVGPIATVPYLRRVAAAHHLHHTDKFDGVPYGLFLGPKELEDVNGEEELQKEIIKRSKVYSN 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67823155 67826616 + Sed0001830.1 Sed01g3857 703161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3857 285 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 49 283 IPR045019 GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016119(PANTHER)|GO:0016123(PANTHER)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3857 Sed-Chr1:67823155 Sed13g0115 Sed-Chr13:768483 7.90E-95 dispersed
Sed01g3857 Sed-Chr1:67823155 Sed07g0988 Sed-Chr7:7250467 2.10E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3857 K15746 - csv:101214325 392.504