Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3859 ATGGCTCAAGAGCTTTGCAAAGGAGAAGAGATCAAATCAAACGAGATGGTAATTGGAGGAGGAGGGGGATTTTACTACAATTCGGATTCGAACATCCAAAGCCGGTTTACGAGCCAGATCCAAACCGGGTTTGGATCAGGCGGGGGACCGGGGGAGATGTTCGAATTGGGGACGAACGAGTCAACCGGCCGCGGCGGCGAGGAGTTTGATGAGAACATGATGGTGGTTGGGCCGTGGGGGACGCAAGATGATAACAACAACAACAATAGATTCCATTTACTTGAGGAAGATTCTTCTTTGAGATGTGTGTTTCCATGTGAACCAAATGAGAGGCCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCATCTAATCCTTCTTCTATTGGGTTACAATCTTTTGAACTTAGACCCCATCAAAATCTTCAACAACACCAATCAAATTTGGCCATTTTTCAGCTTAGAAATTCAAGATTTTTGGTCCCAGCTCAGGAGCTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATAACAACAACAACAAACAAGGTTTTGATTGTTCTTCTTCTTCACCAAAGCACAAAGGGAATAGGCCAAAACAATGGGAATTGGAAGATGGGTCTTCTTCATCTATGAACTTGTCTCTCAAGTCACTTGATTTCATGGACTTGCAAAAGAGAAAAACCAAGCTTTTTTCCATGCTTGAAGAGGTTGAAAGAAGGTACAGGCATTACTGTGAGCAAATGAAGGCGGTGGTGGCCTCGTTTGAAGCGGCGGCAGGGAGTGGTGCAGCGAGGGTGTACTCGTCGTTGGCGTCTAAGGCGATGTCGAGGCACTTTAGATGCCTTAAAGATGGGATTGTGGGGCAAATTCAGGCCACAAAAAAGGCAATGGGAGAAAAGGATCCAATTGCACCGGGTACCACAAGGGGCGAAACGCCTAGGCTAAGAGTGATCGATCAGGCTTTGAGAGAAAAACGAGCTTTCCATCAAATCAGCATGATGGAAAGCCATCCTTGGCGCCCTCAACGTGGCCTCCCCGAGCGCTCGGTTTCGGTTCTTCGCGCTTGGCTCTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTCGATAAACATATTTTAGCTCGCCAAACTGGTCTCTCAAGAAGCCAAGTGTCAAATTGGTTCATTAATGCAAGGGTTAGACTGTGGAAACCAATGGTGGAAGAGATGTATTTAGAAGAAACAAAGGAACAGGAAAAAGAGATCAACAACAACAATGGTAACAACTCTTCCGATGGGGCAGCGGAATTCGACGACGAAATCGATGGTCATCCATCGATACCAACACGAGTAGTCGATCAAAAGCCGACACCAGATCAACTGTTGAGAATAGACTCGGAATATCTCTCTTCAATCATCTCTAACAATTCGGAAAAAAACGATTCAAGAACCATGAAATTTGTAGACAACTACCACAACCACCTTCACACCCACAACCAAACCTTTGGGCGAGTTGCTACCGACTCATTCGGCACCGGGGAGCTCGACTTCTCGTCCTACAACCCCCACTCAGGAAGTGGTGGAGTTTCGTACCCTAACAACAACAACAACAATCAACATTTCAACAACGGCAGTGGCGGTGGCGTGTCGTTGACATTAGGGTTACAACAGCATGCCGCAGCTGGTGGAAACGGTGGCGGAGGGGTGAGCATCGCCTTCTCGCCAGCTGCGGCCGCCGCAGCCGCAGCCCAAAGCTCGATTTTCTTCCCAAGAGATCACATGGAAGAATGTCAACCAGTTCAATATTCACTTTTAGATGGAGAAACTCAGAATCTTCCTTACAGAAATTTGATGGGTGCTCAATTGCTCCATGACTTGGCCGGATAG 1869 46.92 MAQELCKGEEIKSNEMVIGGGGGFYYNSDSNIQSRFTSQIQTGFGSGGGPGEMFELGTNESTGRGGEEFDENMMVVGPWGTQDDNNNNNRFHLLEEDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRPHQNLQQHQSNLAIFQLRNSRFLVPAQELLYEFCSLGITNNNNNKQGFDCSSSSPKHKGNRPKQWELEDGSSSSMNLSLKSLDFMDLQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAAAGSGAARVYSSLASKAMSRHFRCLKDGIVGQIQATKKAMGEKDPIAPGTTRGETPRLRVIDQALREKRAFHQISMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEKEINNNNGNNSSDGAAEFDDEIDGHPSIPTRVVDQKPTPDQLLRIDSEYLSSIISNNSEKNDSRTMKFVDNYHNHLHTHNQTFGRVATDSFGTGELDFSSYNPHSGSGGVSYPNNNNNNQHFNNGSGGGVSLTLGLQQHAAAGGNGGGGVSIAFSPAAAAAAAAQSSIFFPRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67846577 67851014 - Sed0018584.1 Sed01g3859 703163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3859 622 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g3859 622 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677(InterPro)
Sed01g3859 622 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 109 427 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed01g3859 622 SMART prehox3 147 288 IPR006563 -
Sed01g3859 622 SUPERFAMILY Homeodomain-like 340 405 IPR009057 -
Sed01g3859 622 Pfam Associated with HOX 153 286 IPR006563 -
Sed01g3859 622 CDD homeodomain 339 400 IPR001356 GO:0003677(InterPro)
Sed01g3859 622 MobiDBLite consensus disorder prediction 410 433 - -
Sed01g3859 622 MobiDBLite consensus disorder prediction 520 539 - -
Sed01g3859 622 MobiDBLite consensus disorder prediction 183 210 - -
Sed01g3859 622 FunFam BEL1-like homeodomain protein 4 342 404 - -
Sed01g3859 622 Gene3D - 342 404 - -
Sed01g3859 622 SMART HOX_1 339 403 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0100 Sed-Chr1:923905 Sed01g3859 Sed-Chr1:67846577 4.20E-80 dispersed
Sed01g3859 Sed-Chr1:67846577 Sed05g3422 Sed-Chr5:43217900 8.30E-73 dispersed
Sed01g3859 Sed-Chr1:67846577 Sed01g3860 Sed-Chr1:67846577 0.00E+00 tandem
Sed01g3859 Sed-Chr1:67846577 Sed05g0758 Sed-Chr5:5931807 3.60E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37407 PF07526 POX 2.60E-44 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3859 - - - 0.0