Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3864 ATGGGTTTCCCTGCAAGCTACACCGAGCTTCTTCTCCCGAAGCTCTTCCTCCACGCCCTGTCCTTCCTCGGCTTCCTCAGAAAGCTCATCTCCCTCTTCTTCAGCCTCCTCGGCCTCCAGGATTTCCTCGAACCCGACATTCCCTGGCCCAACACCCCCGATCCCTTCCCCGCCGGCCCCGATCCCTTCTCCGCCGCCGCCCTCCGCGACTTCCTCCCCGTCGTCAAGTTCTCCGACCTTCTCCACCCGCCGGAGAGCTGCGCTGTTTGCCTCTATGAATTTGAGCCCGACGACGAGATCCGCCGCCTCCATAACTGCTGCCATATCTTCCACCGCGGATGCGTCGACCGCTGGATCGGTTACGGCCACCGGACCTGTCCGCTCTGCCGGACCGTGTTTATTCCGCCGGATTTGCGATCCGGTGGTGCTTCGAGTTTTGACGATCGGCTCTGGGAGGAGGATTTGGACCTCTTTGAACCGGTTCCTGCGGATTCGCCGATTCTCGTCGGTTCTGGTTTGTAG 522 61.11 MGFPASYTELLLPKLFLHALSFLGFLRKLISLFFSLLGLQDFLEPDIPWPNTPDPFPAGPDPFSAAALRDFLPVVKFSDLLHPPESCAVCLYEFEPDDEIRRLHNCCHIFHRGCVDRWIGYGHRTCPLCRTVFIPPDLRSGGASSFDDRLWEEDLDLFEPVPADSPILVGSGL 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67899819 67901193 + Sed0018018.1 Sed01g3864 703168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3864 173 SUPERFAMILY RING/U-box 72 136 - -
Sed01g3864 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 7 144 - -
Sed01g3864 173 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
Sed01g3864 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 135 IPR013083 -
Sed01g3864 173 SMART ring_2 87 129 IPR001841 -
Sed01g3864 173 Pfam Ring finger domain 86 130 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3774 Sed-Chr1:66875384 Sed01g3864 Sed-Chr1:67899819 4.30E-13 dispersed
Sed01g3864 Sed-Chr1:67899819 Sed09g0036 Sed-Chr9:317372 2.40E-38 dispersed
Sed01g3864 Sed-Chr1:67899819 Sed08g0536 Sed-Chr8:3536271 3.20E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3864 K16281 - csv:101215533 280.026