Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3864 | ATGGGTTTCCCTGCAAGCTACACCGAGCTTCTTCTCCCGAAGCTCTTCCTCCACGCCCTGTCCTTCCTCGGCTTCCTCAGAAAGCTCATCTCCCTCTTCTTCAGCCTCCTCGGCCTCCAGGATTTCCTCGAACCCGACATTCCCTGGCCCAACACCCCCGATCCCTTCCCCGCCGGCCCCGATCCCTTCTCCGCCGCCGCCCTCCGCGACTTCCTCCCCGTCGTCAAGTTCTCCGACCTTCTCCACCCGCCGGAGAGCTGCGCTGTTTGCCTCTATGAATTTGAGCCCGACGACGAGATCCGCCGCCTCCATAACTGCTGCCATATCTTCCACCGCGGATGCGTCGACCGCTGGATCGGTTACGGCCACCGGACCTGTCCGCTCTGCCGGACCGTGTTTATTCCGCCGGATTTGCGATCCGGTGGTGCTTCGAGTTTTGACGATCGGCTCTGGGAGGAGGATTTGGACCTCTTTGAACCGGTTCCTGCGGATTCGCCGATTCTCGTCGGTTCTGGTTTGTAG | 522 | 61.11 | MGFPASYTELLLPKLFLHALSFLGFLRKLISLFFSLLGLQDFLEPDIPWPNTPDPFPAGPDPFSAAALRDFLPVVKFSDLLHPPESCAVCLYEFEPDDEIRRLHNCCHIFHRGCVDRWIGYGHRTCPLCRTVFIPPDLRSGGASSFDDRLWEEDLDLFEPVPADSPILVGSGL | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 67899819 | 67901193 | + | Sed0018018.1 | Sed01g3864 | 703168 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3864 | 173 | SUPERFAMILY | RING/U-box | 72 | 136 | - | - | |
Sed01g3864 | 173 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 7 | 144 | - | - | |
Sed01g3864 | 173 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 130 | IPR001841 | - | |
Sed01g3864 | 173 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 135 | IPR013083 | - | |
Sed01g3864 | 173 | SMART | ring_2 | 87 | 129 | IPR001841 | - | |
Sed01g3864 | 173 | Pfam | Ring finger domain | 86 | 130 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3774 | Sed-Chr1:66875384 | Sed01g3864 | Sed-Chr1:67899819 | 4.30E-13 | dispersed | |
Sed01g3864 | Sed-Chr1:67899819 | Sed09g0036 | Sed-Chr9:317372 | 2.40E-38 | dispersed | |
Sed01g3864 | Sed-Chr1:67899819 | Sed08g0536 | Sed-Chr8:3536271 | 3.20E-14 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3864 | K16281 | - | csv:101215533 | 280.026 |