Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3886 ATGGATGGGAGAGAAGGCATGGCATTGTCTAGTGGCCCTGGTTCTTACTACATACATAGGGGAGGCTCTGGATCAGGGCTACAATCTGCTGGATCACATGCCTCTCCTGTATTCAGGCCAATGGCTAACCAAGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCTGTTGGCTCAACTTATGCTGTTGAGCCACAACATTCCAATTATCTTCATGAAATGAGTATGAATATCTCACCTAGAGTGGCCTCTGGTGAGCCTGTCAAGAAGAAGAGAGGGAGGCCAAGGAAGTATGCTCCTGATGGGCAGGTCTCATTGGGTCTGTCTCCCATGTCTGCTGGCTCTAAGCTCACTCCGGGGTCGAATTCGTCTACCTTGAATCGACGGAGAGGGCGGCCGCCTGGTTCGGGAAGGAAACAACAATTAGCCCTCCTTGGTGAGTGGATGAACAATTCAGCTGGACAAGCTTTTGCCCCACATGTTATTCACGTTGGAGCTGGAGAAGATATTGTAGAAAAAGTATTGTCATTTGCACAGCAGAGACCAAGGGCTGTTTGCATCTTGTCCGGCAATGGCACCGTTTCTTCGGTAACACTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACATATGAGGGTCATTTCCAGATACTGTGTTTGTCTGGTTCTTACTTGGTGGCTGATGATGGCGGTCCTCGAAACAGGACCGGTGGTATCAGTGTTTCCCTCTCTAGTCCTGATGGTCATGTCATTGGTGGTGGCGTGGCAGTTCTCATGGCAGCCGGCCCGGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTCCCAAGATCATCAAGAACAAGCTGGTGGCTGGTCCGAAAAGTAACGATGGTTCTGAAAATGACCACCATGATAATTTGGTTTCGTCAACGAGTGCCCCATCTGCTCAAACCTACAATCCATCTCCAGTTGGCATATGGCCTGGTTCCCGCTCAGTCGATGTGAGAAATCCCCATACTGGAATCGACTTGACGCGGGGATGA 1023 49.76 MDGREGMALSSGPGSYYIHRGGSGSGLQSAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYAVEPQHSNYLHEMSMNISPRVASGEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTLNRRRGRPPGSGRKQQLALLGEWMNNSAGQAFAPHVIHVGAGEDIVEKVLSFAQQRPRAVCILSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVADDGGPRNRTGGISVSLSSPDGHVIGGGVAVLMAAGPVQVVVCSFVYGPKIIKNKLVAGPKSNDGSENDHHDNLVSSTSAPSAQTYNPSPVGIWPGSRSVDVRNPHTGIDLTRG 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68107704 68116046 + Sed0021731.1 Sed01g3886 703190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3886 340 MobiDBLite consensus disorder prediction 74 139 - -
Sed01g3886 340 MobiDBLite consensus disorder prediction 287 340 - -
Sed01g3886 340 CDD DUF296 159 271 IPR005175 -
Sed01g3886 340 Gene3D - 159 281 - -
Sed01g3886 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 66 299 IPR039605 GO:0003680(InterPro)
Sed01g3886 340 MobiDBLite consensus disorder prediction 108 130 - -
Sed01g3886 340 MobiDBLite consensus disorder prediction 298 318 - -
Sed01g3886 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 271 IPR005175 -
Sed01g3886 340 ProSiteProfiles PPC domain profile profile. 154 292 IPR005175 -
Sed01g3886 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3886 Sed-Chr1:68107704 Sed04g2231 Sed-Chr4:36068528 3.10E-74 dispersed
Sed01g3886 Sed-Chr1:68107704 Sed05g0800 Sed-Chr5:6287196 1.40E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3886 - - - 0.0