Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3888 ATGGTGAAGTTGCCGCGGCGGAAACGGTCGCCGGCGGCAACGAATGAGGAGAATGCAAAGCATGTCGAGGACGGCGAAGCGAAGACGGTGGTGTGGGTTTCGGGCATGAGTTGCTCTGCTTGCGCTGTTTCAGTTGAGAACTCCATCAAACACCTTCCGGGCGTTATCAATGCCGCCGTCGATTTCTTGAACGATAGGGCTCAAATCAGCTATCTCCCCAATCTCATCGATGAAGAATCATTACTTAAAGCAATCGAAAATGCTGGATTTCAAGCTACGATATCGAAGGACGGGACCAATCATCGATCGAGGGAAGTATGTCGAATCCGAGTAAACGGGATGGGCTGCAAATCTTGCTCTTCAATGGTAGAGTCAGTTTTGGAAGAAATGTATGGAGTCCAAAAGGCTCACATTGCTCTGTTGAATGAGGAAGCAGAAGTTCACTATGATCCAAAGGTTGTTAACTCCAATCAGTTCATTGTAGCCATACAAGATATTGGCTTTGATGCTTTAATTATAACCATTGGTGAACACATTAGCAAGATTGAGCTCAAGATTGATGGTATGCATAGCGAAAACTCGACTATAAAAGTTAAAGAATCGCTTGAATCGGTCCCGGGAATCGAAGATATTGATATAGATATGGCATTGAGCAAAGTAACCATATCTTACTGGCCTGATATAACAGGACCTAGAACTTTCATTGAAGTCATCGAGTCGATCAAATCTGAGCATTTCAAGGCAACAATATACCCCGAAGAAGCGGGACGAGAAACTCGTAAGGAGAAAGAAATTAAACAGCATTATAAGTACCTTTTGTGGAGCTGTGCTCTTTCTATTCCTGTTTTCTTAACATCCATGGTATTCATGTATATACCTGGGATCAAGCAGACTTTAGATATCAAAGTAGTTAATATGATGAACGTCGGACACATTATTCGGTGGAATTTGTCAACTCCGGTGCAGTTCATCATAGGTTCGAGATTCTACGTTGGATCTTACAAAGCAGTGCGTCGTGGTTCGGCCAACATGGATGTATTGATCACTCTGGGAACAAATGCAGCTTATTTCTATTCTGTCTATATAGTGTTAAGATCAGCTACATCCCCTTTTTTCAATGGAACAGATTTCTTTGAGACTAGTTCAATGCTGATCACATTCATCCTACTTGGTAAATATTTAGAGGTTCTTGCAAAAGGAAAAACTTCTGAGGCCATTGCCAAGCTTAAGAACTTGGCGCCGGAGACTGCAACGCTCTTGACTCTAGATGACCACGGAGATGTGATCGGCGAAGCAGAAATCACTAGTGAATTGATTCAAAAGAATGATGTAATTAAGATCATACCGGGTGGGAGAGTAGCTTCCGATGGTCTTGTCGTATGGGGGGAAAGTCATGTCAATGAGAGTATGATCACGGGAGAAGCGAAGCCAGTAGCGAAAAGGACGGGCGACAAGGTGATAGGAGGAACTGTGAATGAGAATGGGGTGTTGCATATAAAGGTAACTCATGTCGGCTCGGAGAGTTCGTTAGCGCAAATTGTTCGACTCGTCGAATCGTCTCAGTTGGCAAAAGCTCCTATTCAGAAATTTGCAGACCATATCTCCAAGTATTTTGTGCCTCTAGTAATTTTGCTTTCTTTTCTCACTTGGATTGCCTGGTTTTTAGCTGGAAAGTTGCATCTCTATCCCAAATCCTGGCTGCCTAGTTCAATGGATAGTTTTGAGCTTGCACTCCAATTCGGGATTTCGGTTATGGTCATAGCTTGCCCTTGTGCTCTCGGCCTCGCCACCCCGACTGCCGTGATGGTCGGTACCGGTGTTGGTGCATCTCAAGGTGTACTAATCAAAGGCGGTCAAGCTTTAGAATTTGCACATAAGGTGAGCTGCATTGTGTTTGATAAGACAGGAACTCTAACAATTGGAAAGCCAGTGGTTGTAAATGTAGAACTTATGAACAATGTAGTACTCGAAGAATTGCTCGAACTCACTGCTGCAACCGAGGTGAACAGTGAGCATCCAGTAGCCAAGGCCATTGTTGAATATGCCAAGCAATTGAAGGAAGAACAGAATCCCATTTGGCCAGAAGCTCAAGAATTCATATCTATTCCTGGCCATGGAGTGGAAGCCACTGTAAGGAACAAGAAAATAATAGTTGGAAACAAGAGTTTGATGATGAACAATGACATAGAAATTCCGGGGGAAGCGGAGAGCTTCCTCATCGATGCAGAAGGTATGGCTCAAACTGCGGTTTTGGTGGCCATAAATCGAACGGTGTCGGGAGTTATCACGGTGACGGATCCATTGAAACCGGGTTCCAAAGAAGTCATTTCAATTCTCAAGTCTATGGAAGTGAAGAGCATCATGGTAACTGGTGACAATTGGGGAACTGCAAATTCCATTGCCAAAGAAGTTGGAATTGAAACTGTCATTGCAGAGGCCAAGCCTCAGCAGAAAGCAGAGGAAGTGAAGAATCTTCAGACGGCGGGACACACGGTGGCGATGGTAGGAGACGGGATCAACGACTCACCCGCTCTAGTTGCAGCCGATGTCGGGATGGCGATAGGAGCTGGCACAGACATTGCCATTGAGGCAGCAGACATTGTTCTGATGAAAAATGACTTGCAAGATGTTATAACTGCCATTCATCTTTCAAGAAAAACCTTTGCTAGAATTCGCCTGAATTACATGTGGGCTTTAGGCTATAATCTTCTAGCCATTCCGGTCGCCGCGGGCGTCCTGTTCCCTTCGACTCGGTTTCGGCTACCGCCGTGGATCGCCGGAGCCGCCATGGCAGCTTCTTCTGTTAGTGTGGTATGCAGTTCTTTGATGTTGAAGAAGTACAGAAGACCTAAAAAGCTTGATGAAGTTGAAATTCAAATGAAAGGAATAGTGGTTGAATGA 2901 44.67 MVKLPRRKRSPAATNEENAKHVEDGEAKTVVWVSGMSCSACAVSVENSIKHLPGVINAAVDFLNDRAQISYLPNLIDEESLLKAIENAGFQATISKDGTNHRSREVCRIRVNGMGCKSCSSMVESVLEEMYGVQKAHIALLNEEAEVHYDPKVVNSNQFIVAIQDIGFDALIITIGEHISKIELKIDGMHSENSTIKVKESLESVPGIEDIDIDMALSKVTISYWPDITGPRTFIEVIESIKSEHFKATIYPEEAGRETRKEKEIKQHYKYLLWSCALSIPVFLTSMVFMYIPGIKQTLDIKVVNMMNVGHIIRWNLSTPVQFIIGSRFYVGSYKAVRRGSANMDVLITLGTNAAYFYSVYIVLRSATSPFFNGTDFFETSSMLITFILLGKYLEVLAKGKTSEAIAKLKNLAPETATLLTLDDHGDVIGEAEITSELIQKNDVIKIIPGGRVASDGLVVWGESHVNESMITGEAKPVAKRTGDKVIGGTVNENGVLHIKVTHVGSESSLAQIVRLVESSQLAKAPIQKFADHISKYFVPLVILLSFLTWIAWFLAGKLHLYPKSWLPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALEFAHKVSCIVFDKTGTLTIGKPVVVNVELMNNVVLEELLELTAATEVNSEHPVAKAIVEYAKQLKEEQNPIWPEAQEFISIPGHGVEATVRNKKIIVGNKSLMMNNDIEIPGEAESFLIDAEGMAQTAVLVAINRTVSGVITVTDPLKPGSKEVISILKSMEVKSIMVTGDNWGTANSIAKEVGIETVIAEAKPQQKAEEVKNLQTAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNDLQDVITAIHLSRKTFARIRLNYMWALGYNLLAIPVAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKKYRRPKKLDEVEIQMKGIVVE 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68123553 68135150 - Sed0020675.1 Sed01g3888 703192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3888 966 FunFam ATPase copper transporting beta 101 174 - -
Sed01g3888 966 FunFam Copper-transporting ATPase HMA5 26 97 - -
Sed01g3888 966 SUPERFAMILY Calcium ATPase, transmembrane domain M 376 923 IPR023298 -
Sed01g3888 966 CDD HMA 33 93 IPR006121 GO:0046872(InterPro)
Sed01g3888 966 ProSitePatterns Heavy-metal-associated domain. 111 141 IPR017969 GO:0046872(InterPro)
Sed01g3888 966 SFLD p-type atpase 613 887 IPR044492 -
Sed01g3888 966 Gene3D - 181 250 - -
Sed01g3888 966 SFLD C1.7: P-type atpase like 613 887 - -
Sed01g3888 966 SUPERFAMILY Calcium ATPase, transduction domain A 432 517 IPR008250 -
Sed01g3888 966 Gene3D - 399 521 - -
Sed01g3888 966 SUPERFAMILY HAD-like 630 941 IPR036412 -
Sed01g3888 966 ProSiteProfiles Heavy-metal-associated domain profile. 105 171 IPR006121 GO:0046872(InterPro)
Sed01g3888 966 SUPERFAMILY HMA, heavy metal-associated domain 175 242 IPR036163 GO:0046872(InterPro)
Sed01g3888 966 CDD P-type_ATPase_Cu-like 272 931 - -
Sed01g3888 966 PRINTS P-type cation-transporting ATPase superfamily signature 858 870 - -
Sed01g3888 966 PRINTS P-type cation-transporting ATPase superfamily signature 467 481 - -
Sed01g3888 966 PRINTS P-type cation-transporting ATPase superfamily signature 631 645 - -
Sed01g3888 966 PRINTS P-type cation-transporting ATPase superfamily signature 760 771 - -
Sed01g3888 966 PRINTS P-type cation-transporting ATPase superfamily signature 782 792 - -
Sed01g3888 966 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Sed01g3888 966 PRINTS Copper-transporting ATPase 1 signature 83 103 - -
Sed01g3888 966 PRINTS Copper-transporting ATPase 1 signature 28 53 - -
Sed01g3888 966 PRINTS Copper-transporting ATPase 1 signature 54 77 - -
Sed01g3888 966 PRINTS Copper-transporting ATPase 1 signature 129 150 - -
Sed01g3888 966 ProSiteProfiles Heavy-metal-associated domain profile. 27 93 IPR006121 GO:0046872(InterPro)
Sed01g3888 966 SUPERFAMILY HMA, heavy metal-associated domain 105 176 IPR036163 GO:0046872(InterPro)
Sed01g3888 966 Gene3D - 642 768 IPR023299 GO:0000166(InterPro)
Sed01g3888 966 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 11 960 - -
Sed01g3888 966 NCBIfam heavy metal translocating P-type ATPase 344 944 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Sed01g3888 966 ProSitePatterns Heavy-metal-associated domain. 33 62 IPR017969 GO:0046872(InterPro)
Sed01g3888 966 Gene3D - 102 172 - -
Sed01g3888 966 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g3888 966 SUPERFAMILY HMA, heavy metal-associated domain 23 96 IPR036163 GO:0046872(InterPro)
Sed01g3888 966 FunFam Probable copper-transporting ATPase HMA5 741 892 - -
Sed01g3888 966 Gene3D - 623 885 IPR023214 -
Sed01g3888 966 ProSiteProfiles Heavy-metal-associated domain profile. 180 246 IPR006121 GO:0046872(InterPro)
Sed01g3888 966 NCBIfam HAD-IC family P-type ATPase 384 917 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed01g3888 966 Gene3D - 21 101 - -
Sed01g3888 966 Pfam haloacid dehalogenase-like hydrolase 628 849 - -
Sed01g3888 966 ProSitePatterns E1-E2 ATPases phosphorylation site. 633 639 IPR018303 -
Sed01g3888 966 CDD HMA 183 249 IPR006121 GO:0046872(InterPro)
Sed01g3888 966 Pfam E1-E2 ATPase 412 609 - -
Sed01g3888 966 FunFam Copper-transporting ATPase 1, putative 399 521 - -
Sed01g3888 966 CDD HMA 109 170 IPR006121 GO:0046872(InterPro)
Sed01g3888 966 Pfam Heavy-metal-associated domain 30 90 IPR006121 GO:0046872(InterPro)
Sed01g3888 966 Pfam Heavy-metal-associated domain 109 169 IPR006121 GO:0046872(InterPro)
Sed01g3888 966 Pfam Heavy-metal-associated domain 184 242 IPR006121 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3888 Sed-Chr1:68123553 Sed14g0722 Sed-Chr14:7434904 0.00E+00 dispersed
Sed01g3888 Sed-Chr1:68123553 Sed01g3889 Sed-Chr1:68123553 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3888 K17686 - csv:101220448 1659.81