Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3893 ATGAACGCGGAGAGTCAAAACGAGAAGAAAGAGTATGCTGCTGATCTTTCCTCCATAAAAGAGGCCCGGATACGAATCCGACCTTTCGCCCACCAAACCCCAGTTTTTTCTTCTGAGACTATTAATGCTGCATCAGGAAAACAGCTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCTTTTAAATTCAGAGGTGCCTGCAATGCTATATATTCACTTGATGATGATCAAGCTGCTAAAGGGGTTGTGACACACAGCAGTGGCAACCATGCTGCAGCTTTGTCTCTGGCTGCAAAACTGCGAGGGATCCCTGCATATATAGTTATACCAGAAAATGCTCCAAAATGTAAAGTTGAAAATGTGATACGTTATGGTGGTCAGGTTATTCGGAGCGAAGCCACAATACAATCGAGAGAGACGATTGCCGCAAAGGTTATGCAAGAAACTGGTGCACTTCTTATACATCCATATAATGATGGACGCATAATAAGCGGGCAAGGTACCATCTCGCTGGAGCTTCTGGAACAAGTCCCACAAATCGACACTCTAATCGTTCCCATAAGTGGTTCGTTTGATCGGATTTTTATACGTTCATCGTGTATTTTGTGCACTGTCTTAGTTGATAATCTAATGCTTTCTGAAACCCCTCACCATGAAAATGTAGGTGGTGGTTTGATATCTGGAATTTCTGTGGCTGCAAAAGCCATCAATCCTGCCATCCGGATTTTTGCAGCAGAACCTAAGGGAGCTAATGATGCAGCCTTGTCAAAAGCAGCTGGTAAGATAGTTACACTGGCAGAGACCAACACCATTGCCGATGGCCTTCGAGCTTTTCTTGGTGACCTTACTTGGCCGATAGTCCGGGATTTGGTCGATGATATAATTACTGTGGAGGACGCGGAGATAGTTGAAGCAATGAGACTTTGTCATGAAGTGCTGAAAGTTGTTGTGGAACCTAGTGGGGCTATAGGCCTTGCTGCTGTTTTCTCTGATAGTTTCAAGCATAACCCTTCATGGAAGGACTGCAACCGCATTGGCATTATACTTTCAGGAGGTAATGTTGACCTTAGCATGCTGTGGAATTCATACGAAAAATGA 1101 44.05 MNAESQNEKKEYAADLSSIKEARIRIRPFAHQTPVFSSETINAASGKQLFFKCECFQKGGAFKFRGACNAIYSLDDDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPKCKVENVIRYGGQVIRSEATIQSRETIAAKVMQETGALLIHPYNDGRIISGQGTISLELLEQVPQIDTLIVPISGSFDRIFIRSSCILCTVLVDNLMLSETPHHENVGGGLISGISVAAKAINPAIRIFAAEPKGANDAALSKAAGKIVTLAETNTIADGLRAFLGDLTWPIVRDLVDDIITVEDAEIVEAMRLCHEVLKVVVEPSGAIGLAAVFSDSFKHNPSWKDCNRIGIILSGGNVDLSMLWNSYEK 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68180643 68185797 + Sed0017409.1 Sed01g3893 703197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3893 366 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 54 67 IPR000634 GO:0006520(InterPro)|GO:0030170(InterPro)
Sed01g3893 366 Coils Coil 2 22 - -
Sed01g3893 366 Pfam Pyridoxal-phosphate dependent enzyme 223 352 IPR001926 -
Sed01g3893 366 Pfam Pyridoxal-phosphate dependent enzyme 27 190 IPR001926 -
Sed01g3893 366 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 16 190 IPR036052 -
Sed01g3893 366 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 223 360 IPR036052 -
Sed01g3893 366 Gene3D - 33 190 IPR036052 -
Sed01g3893 366 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 8 190 - GO:0000287(PANTHER)|GO:0003941(PANTHER)|GO:0005524(PANTHER)|GO:0008721(PANTHER)|GO:0018114(PANTHER)|GO:0030170(PANTHER)|GO:0030378(PANTHER)|GO:0070179(PANTHER)
Sed01g3893 366 CDD Thr-dehyd 16 356 - -
Sed01g3893 366 Gene3D - 66 157 IPR036052 -
Sed01g3893 366 Gene3D - 221 364 IPR036052 -
Sed01g3893 366 FunFam Threonine dehydratase catabolic 62 158 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3893 K12235 - csv:101217208 588.571