Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3916 ATGGGCAAAGCCTTCAAATGGATTCGGGCCCTTCTCGGGCTCAAAAAACCCGACCCGGCTGCTCCCTCAAAGCCCAACCCCAAATGGCACTTCGCCAAATCCTTCAAAGAAAAAGACAACCCCCGCCACCCTCACCCCGACCACCACCACGCCGCCTCCGCCAAGCTCACCACTAGTGGACGGTCCGTTCTCGCCTTCTACGGTGCCGAATCAGCCGCCATCAAAATCCAGGCTGCATTTCGAGGATTTTTGGCAAGGAAGGCATTGAGAGCTCTAAGAGGGTTGGTGAGACTTCAGGCTTTAGTTCGCGGGCATATCGAGAGAAAGCGGACTGCTGAATGGATACAGCGGATGCAGGCCTTACTAAGAGCACAGGCACGGGCACGAGCTGGGCGAAGTCAATCTCACGAGTTTTTGCATACCGATATGAAATCGGGTAGCTTCTGTCTGGATCCTGTTACACCAGAAAAATTTGAATACAGTCCACACGCTAAGAGCACTAGGTTTAAGCAAATGCAGAGGTCTGGCTCAAGATTCACAACTATTGATGCTGATAAGATTGATAGAATCCTTGAAATTGAGAATGAGAAAACTCACTTTAAGTTGAAACCCAAAAGCCTCTTTAGTTCCATCAAGCTTGCTTTATCTTCAGAAGTGCCTTCTTCAAAAGAGCCTGCAACTTATCATGGTGTTCCCAGTCCATTTTCCTGTGAAACTCAATGTCACAGTCCATTTATATTCTCCCATGAAGTTGAGGAAAGCTCTTTCTTTTCGGTCTCGTCAAGAGGTGCTAGTACAAAGAAAAGCCCCTTCACCCCGACCAAGAGCGACAGTACGAGGAGCTATTTCAGCGGTGACGCGGTGTATCCGAGCTATATGGCCTGCACTACATCTTCAAGAGCCAAAATGAGATCTCATAGCGCTCCGAGACAGCGGCCTCAGTATAATAGATCGAGTTCTGCTAAGCGGGGGTCTGCACATGGCTTTGGGGAATCGGGATTGACTGCACAGCAGGTATCAACTTTACAGTCCAATTTTGTAGGGAAAACCTACCCCGGTTCCGGTCGCCTGGACAAACTCGGGATGCCTGTTGGTTACAGATACTGA 1107 49.32 MGKAFKWIRALLGLKKPDPAAPSKPNPKWHFAKSFKEKDNPRHPHPDHHHAASAKLTTSGRSVLAFYGAESAAIKIQAAFRGFLARKALRALRGLVRLQALVRGHIERKRTAEWIQRMQALLRAQARARAGRSQSHEFLHTDMKSGSFCLDPVTPEKFEYSPHAKSTRFKQMQRSGSRFTTIDADKIDRILEIENEKTHFKLKPKSLFSSIKLALSSEVPSSKEPATYHGVPSPFSCETQCHSPFIFSHEVEESSFFSVSSRGASTKKSPFTPTKSDSTRSYFSGDAVYPSYMACTTSSRAKMRSHSAPRQRPQYNRSSSAKRGSAHGFGESGLTAQQVSTLQSNFVGKTYPGSGRLDKLGMPVGYRY 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68346925 68350701 - Sed0005254.1 Sed01g3916 703220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3916 368 MobiDBLite consensus disorder prediction 36 54 - -
Sed01g3916 368 Gene3D - 68 121 - -
Sed01g3916 368 ProSiteProfiles IQ motif profile. 69 97 - -
Sed01g3916 368 Pfam IQ calmodulin-binding motif 71 90 IPR000048 GO:0005515(InterPro)
Sed01g3916 368 SMART iq_5 91 112 IPR000048 GO:0005515(InterPro)
Sed01g3916 368 SMART iq_5 68 90 IPR000048 GO:0005515(InterPro)
Sed01g3916 368 PANTHER IQ-DOMAIN 5-RELATED 7 319 - -
Sed01g3916 368 ProSiteProfiles IQ motif profile. 93 120 - -
Sed01g3916 368 MobiDBLite consensus disorder prediction 300 331 - -
Sed01g3916 368 MobiDBLite consensus disorder prediction 36 55 - -
Sed01g3916 368 Pfam Protein of unknown function (DUF4005) 266 326 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3916 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3916 Sed-Chr1:68346925 Sed07g1058 Sed-Chr7:7616645 4.80E-20 dispersed
Sed01g3916 Sed-Chr1:68346925 Sed13g0167 Sed-Chr13:1061344 1.90E-24 wgd
Sed01g3916 Sed-Chr1:68346925 Sed05g0826 Sed-Chr5:6498686 2.40E-136 wgd
Sed01g3916 Sed-Chr1:68346925 Sed07g1057 Sed-Chr7:7616645 3.40E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g612 . Blo15g00158 Bda05g00058 . Bpe03g00297 . . . Cmo16g00149 . . . . . Sed01g3916 . Cpe14g00120 Bhi01g01353 Tan01g0278 Cmetu09g1857 Lac11g2130 Hepe07g0179 Mch10g0175 . Cla01g00296 Cam01g0307 Cec01g0297 Cco01g0314 Clacu01g0307 Cmu01g0292 Cre09g2216 . . . . Lsi05g01253 Csa05g00319 Chy09g01189 Cme06g00975 . . Bda06g00672 . . . . . . . . Cma16g00142 . . . . . Bhi12g00208 . . Lac11g2130 Hepe06g1578 . Lcy12g1690 Cla05g00859 Cam05g0945 Cec05g0950 Cco05g0950 Clacu05g0932 Cmu05g0890 Cre05g0975 . Csa03g01689 Chy06g00922 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007128 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 37