Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3918 ATGGCTGACCCAAATCTTCCCATTAATGACACCCAAAAAGACCAATCTCAGCTTCCTCAACTTCCTCAACTTCCTCCATCAAATCCTAAACCAATTGTAATTGACCCTTTTGTTTCTTCTCCTGTCCCCACATGCCAAGATCCAATTCCAAATCCAATTCCAAAATCCCAAATGGGAGAAAAAGAACTTCATTTGGTTATGAAGCTACCTCCATTGCCACCAGCTTCTTCCTCTTCCTCAACTTCTCCTTCTTCTTCCTCCACCAAGAAGCATTCTTTATATAGAGGAGTCCGATGTCGCAGCGGGAAATGGGTCTCCGAGATCCGGGAGCCCCGCAAGACCACGCGTATATGGCTCGGCACGTTTCCGACCCCCGAGATGGCTGCTTCTGCTTACGACGTCGCCGCTCTTGCCCTCCGTGGAAGTGATGCTATTCTCAATTTCCCTTCCTCTATTGCCTCCTACCCGATTCCCGCTTCGACATCTCCCGTCGATATACGTACGGCTGCCTCTACTGCCGCTGCTGCCACCGCGGCCAATGCGACGAAAAAGGCGGAGCCTTGTCGTAGTAGCATTGAAGATACGGCGATCGGTGTTGTGGAAGATGGTGGCTCTACGGAGGCGTTTGTGGATGAGGAGGAGATTTTCGGGATGCCGAGTTTGCTGGCGGATATGGCGGAGGGGATGATGGTGTCGCCGCCGAGAATGAACTCGCCGCCGCCGCCCGATGACTCCATGGAAAGTTCTGATGGCACGGATGGTTTGTGGAACTACTTTTGA 780 52.05 MADPNLPINDTQKDQSQLPQLPQLPPSNPKPIVIDPFVSSPVPTCQDPIPNPIPKSQMGEKELHLVMKLPPLPPASSSSSTSPSSSSTKKHSLYRGVRCRSGKWVSEIREPRKTTRIWLGTFPTPEMAASAYDVAALALRGSDAILNFPSSIASYPIPASTSPVDIRTAASTAAAATAANATKKAEPCRSSIEDTAIGVVEDGGSTEAFVDEEEIFGMPSLLADMAEGMMVSPPRMNSPPPPDDSMESSDGTDGLWNYF 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68377726 68379059 + Sed0011627.1 Sed01g3918 703222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3918 259 FunFam Ethylene-responsive transcription factor 2 92 150 - -
Sed01g3918 259 SUPERFAMILY DNA-binding domain 92 151 IPR016177 GO:0003677(InterPro)
Sed01g3918 259 PRINTS Ethylene responsive element binding protein signature 131 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3918 259 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3918 259 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 83 258 IPR045277 GO:0003700(InterPro)
Sed01g3918 259 SMART rav1_2 93 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3918 259 CDD AP2 92 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3918 259 ProSiteProfiles AP2/ERF domain profile. 93 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3918 259 MobiDBLite consensus disorder prediction 242 259 - -
Sed01g3918 259 Pfam AP2 domain 93 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3918 259 MobiDBLite consensus disorder prediction 1 56 - -
Sed01g3918 259 MobiDBLite consensus disorder prediction 73 92 - -
Sed01g3918 259 Gene3D AP2/ERF domain 93 151 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3918 259 MobiDBLite consensus disorder prediction 69 93 - -
Sed01g3918 259 MobiDBLite consensus disorder prediction 232 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3918 Sed-Chr1:68377726 Sed02g0556 Sed-Chr2:43184175 1.80E-34 dispersed
Sed08g2857 Sed-Chr8:39791832 Sed01g3918 Sed-Chr1:68377726 1.10E-43 transposed
Sed01g3918 Sed-Chr1:68377726 Sed13g0173 Sed-Chr13:1119894 1.10E-29 wgd
Sed01g3918 Sed-Chr1:68377726 Sed05g0834 Sed-Chr5:6581566 9.10E-66 wgd
Sed01g3918 Sed-Chr1:68377726 Sed07g1072 Sed-Chr7:7742435 3.30E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37414 PF00847 AP2 2.90E-11 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3918 - - - 0.0