Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3930 ATGCAAGAACCTGGGTCTTCTAGCGGTGCCCTCATCGGCGAAGTTCCGGTCTCCGGCGACGCTCATCTCAAGGCGGAGATTGCGACTCATCCGCTTTACGAGCAGCTTTTAGGCGCCCATGTTTCTTGTCTTCGCGTTGCTACTCCAATCGATCACCTTCCTGTGATTGACGCTCAGTTGGCGCAATCGCATCACGTTTTGCGATCTTACGTTTCTCACCAACATGCCCTTTCCTTGTCGCCTCATCACCGTCAAGAACTCGATAATTTTCTCGCGCAGTATATGGTGGTTTTGTGCTCTTTTAAGGAGCAGCTTCAGCAACATGTGAGAGTACACGCAGTGGAAGCTGTTATGGGTTGCCGTGAAATTGAAAATACTTTACAAGCTCTTACAGGTGTGAGCCTTGGTGAAGGCACTGGCGCAACGATGTCGGACGACGAAGATGATGTTCCAATGGACTTCTCTGTCGATCAGTCATCTATCATGGATGCACATGACATGATGGGGTTTGGGCCGCTGCTTCCGACCGAATCCGAGAGATCGTTGATGGAGAGGGTTCGACAGGAACTGAAGATCGAGCTAAAACAGGTTTCTTTTATATGGTGTAAACAAATTCTTACTACATTATAG 630 48.73 MQEPGSSSGALIGEVPVSGDAHLKAEIATHPLYEQLLGAHVSCLRVATPIDHLPVIDAQLAQSHHVLRSYVSHQHALSLSPHHRQELDNFLAQYMVVLCSFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDVPMDFSVDQSSIMDAHDMMGFGPLLPTESERSLMERVRQELKIELKQVSFIWCKQILTTL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68451195 68455943 - Sed0026276.2 Sed01g3930 703234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3930 209 SMART KNOX1_2 21 65 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed01g3930 209 SMART KNOX2_2 77 132 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed01g3930 209 Pfam KNOX2 domain 81 131 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed01g3930 209 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 22 107 IPR053363 -
Sed01g3930 209 Pfam KNOX1 domain 23 64 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3930 Sed-Chr1:68451195 Sed05g0848 Sed-Chr5:6729889 1.00E-91 dispersed
Sed01g3929 Sed-Chr1:68451195 Sed01g3930 Sed-Chr1:68451195 6.90E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3930 - - - 0.0