Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3933 ATGGTGAGAGGAAAAACTCAAATGAAGCGCATAGAGAATGCTACAAGCAGGCAAGTTACCTTTTCCAAGCGCAGAAATGGACTATTGAAGAAGGCATTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCACTTATTATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCCAATTGCAGTATGAACAAGACAATTGATCGGTATCAGAACAGAACCAAAGAAGTGATGTCCAGTGACAGCCAAGCTTTAGAAGATGTGCAGTTGGAGAAGCAATTTGACTCATTTTCCATGACTAAGAAGTTGCAGCACCTTGAAGTTTGTAAAAGAAAACTAATGGGAGATGGCTTGGATTTATGTTCCATTGAAGAGTTGGTGCAGCTTGAAAGACAAATTGAAAGAAGCTTAACCAAAATAAGGTCAAGAAAGTTTCAAATGCTGAAGGAAGATATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGACGAAAATGCAGCACTGCAGATGAAGGTTAGAACTGAATCATCAAAAAAATCAAAAACCAAGCAGAGACCAGAATCAAACAACCAAGAGGCTATGGATGTGGAAACTGAACTGTTCATAGGACCACCATAA 618 38.83 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKEVMSSDSQALEDVQLEKQFDSFSMTKKLQHLEVCKRKLMGDGLDLCSIEELVQLERQIERSLTKIRSRKFQMLKEDIMKLKEEEKMLLDENAALQMKVRTESSKKSKTKQRPESNNQEAMDVETELFIGPP 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68479941 68486492 + Sed0028207.1 Sed01g3933 703237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3933 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3933 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3933 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3933 205 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Sed01g3933 205 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed01g3933 205 Pfam K-box region 92 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g3933 205 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3933 205 MobiDBLite consensus disorder prediction 169 205 - -
Sed01g3933 205 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3933 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed01g3933 205 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3933 205 Coils Coil 144 171 - -
Sed01g3933 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3933 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3933 205 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g3933 205 MobiDBLite consensus disorder prediction 174 192 - -
Sed01g3933 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3933 Sed-Chr1:68479941 Sed01g3935 Sed-Chr1:68482533 5.10E-72 dispersed
Sed01g3933 Sed-Chr1:68479941 Sed01g3934 Sed-Chr1:68479941 1.10E-106 tandem
Sed01g3933 Sed-Chr1:68479941 Sed12g0222 Sed-Chr12:1232327 1.70E-46 wgd
Sed01g3933 Sed-Chr1:68479941 Sed13g0184 Sed-Chr13:1200419 1.40E-37 wgd
Sed01g3933 Sed-Chr1:68479941 Sed05g0850 Sed-Chr5:6774610 6.30E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37416 PF01486 K-box 9.90E-20 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3933 - - - 0.0