Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3955 ATGGATCCCCACTCTCTTCCCCCTCCTTTCCACTCAAGAGATTTCCATCTCCATCAACAACAATTCTCTGAAGAAGAACATGGCGACGACGCCACTCCCCGTCTGAAACGAGATCGAGACGACCCCACAGCCGACGGAGAGATATCTCGACGACCGAGAGGAAGACCAGCCGGATCCAAGAACAAACCCAAGCCACCAATTATCATAACTCGCGACAGTGCCAACGCTCTTCGCACTCACGTCGTCGAAGTCGCCGACGGCTGCGACATCGTCGACAGCGTCGCCACCTTCGCCCGTCGTCGACAGCGTGGCGTCTGCATCATGACCGCCACCGGCACCGTCACCAACGTCACTCTCCGCCAGCCGGCTTCCCCCGGTGCAATTCTCAACTTACACGGTCGCTTCGAGATCTTATCACTTTCCGGCTCCTTCCTCCCGCCCCCAGCTCCTCCGGCCGCCACCACCTTGACTATTTATCTCTCCGGCGGGCAGGGTCAGGTCGTCGGCGGTAGCGTTGTTGGTGTTTTGACGGCCGCCGGTCCGGTTGTCATCATGGCGGCGTCGTTTAGCAACGCTGCTTATGAACGGCTGCCGTTGGAGGATGAGGAGCAGGCGTTGGTGCCGCCGGTGCACGGCGGCGGCGGCGGAATTGGATCTCCCGTTGAGGTTGGACAGTCACAAACGGCGCAAGACGGAAATGCGCCGTTATTTCACGGTTTGGGTCCGAATCTTTTGAACTCGATTCAAATGCAGCCGTCGGATGCAGCTTATTGGGCGAATGCTCGGCCTCCCTACTAA 798 58.9 MDPHSLPPPFHSRDFHLHQQQFSEEEHGDDATPRLKRDRDDPTADGEISRRPRGRPAGSKNKPKPPIIITRDSANALRTHVVEVADGCDIVDSVATFARRRQRGVCIMTATGTVTNVTLRQPASPGAILNLHGRFEILSLSGSFLPPPAPPAATTLTIYLSGGQGQVVGGSVVGVLTAAGPVVIMAASFSNAAYERLPLEDEEQALVPPVHGGGGGIGSPVEVGQSQTAQDGNAPLFHGLGPNLLNSIQMQPSDAAYWANARPPY 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68666267 68667064 - Sed0005882.1 Sed01g3955 703259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3955 265 CDD DUF296 78 144 IPR005175 -
Sed01g3955 265 Gene3D - 77 206 - -
Sed01g3955 265 FunFam AT-hook motif nuclear-localized protein 77 204 - -
Sed01g3955 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 265 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Sed01g3955 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 190 IPR005175 -
Sed01g3955 265 ProSiteProfiles PPC domain profile profile. 74 210 IPR005175 -
Sed01g3955 265 MobiDBLite consensus disorder prediction 1 68 - -
Sed01g3955 265 PIRSF ESCAROLA 4 265 IPR014476 GO:0003680(InterPro)
Sed01g3955 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 208 - -
Sed01g3955 265 MobiDBLite consensus disorder prediction 7 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3955 Sed-Chr1:68666267 Sed02g1592 Sed-Chr2:51479887 1.10E-69 dispersed
Sed01g3955 Sed-Chr1:68666267 Sed01g3958 Sed-Chr1:68725230 6.50E-19 proximal
Sed01g3955 Sed-Chr1:68666267 Sed12g0242 Sed-Chr12:1406829 1.60E-17 wgd
Sed01g3955 Sed-Chr1:68666267 Sed13g0195 Sed-Chr13:1277102 6.10E-17 wgd
Sed01g3955 Sed-Chr1:68666267 Sed05g0860 Sed-Chr5:6877873 4.30E-103 wgd
Sed01g3955 Sed-Chr1:68666267 Sed07g1100 Sed-Chr7:8068997 5.00E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3955 - - - 0.0