Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3958 | ATGGAGGGAAGAGATGGTGGTGCAAGTAGTGGGGTTACTGTGGTGGGATCAGATGCTCCGTCGGAATACCAAATAGCTCCGAGAACCACCGATAATCCTCCGCCGCCACCGCCTCCGCCGGCGAATCAACCAGCTTCGACTCAGCCGCCCACGCCGGCGTCGTCTGTTCCGGTAAAGAAGAAAAGAGGGCGCCCGAGAAAATATGGACCAGATGGCTCTGTCAATATGGCTCTGTCTCCGAAGCCGATATCGTCGTCGGTGCCGCCGCCGGTGATCGATTTCTCGACGGAGAAAAGGGGGAAAGTCCGGCCGGTGAGCGCTGTGAGCAAAAGCAAGTTTCAAGTGGACAATTTAGGCGACTGGGTTCCGTGTTCTGTCGGTGCAAATTTTACACCTCATATCATCACTGTCAACACGGGCGAGGATGTCACAATGAAGATAATATCCTTTTCCCAACAAGGGCCTCGAGCTATATGCATTTTGTCTGCAAACGGTGTGATCTCAAGTGTCACTCTCCGTCAGCCTGATTCCTCTGGAGGAACATTAACATATGAGGGTCGATTCGAAATCCTGTCCTTGTCTGGCTCATTCATGCCTAGTGATAATGGAGTAACTAGGAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGCCGCGTTGTAGGTGGCGGAGTAGCTGGTTTGTTAGTAGCTGCTAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACATGAGCAGAAACCTAAAAAGCCAAAGCAAGATACTGTTCCAACGGCCCTGCCAACTGCTGCCATTCCGATATCTTGTGCCGATCCTAAGTCCAACCTCTCGCCCTCCAGCTCCTTTCGTGGCGATAACTGGTCGATGCTTCCAAATGATTCAAGAAACAAGCCAACTGATATTAATGTGTCCCTACCCAGGGCTTGA | 948 | 51.05 | MEGRDGGASSGVTVVGSDAPSEYQIAPRTTDNPPPPPPPPANQPASTQPPTPASSVPVKKKRGRPRKYGPDGSVNMALSPKPISSSVPPPVIDFSTEKRGKVRPVSAVSKSKFQVDNLGDWVPCSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGVTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKQDTVPTALPTAAIPISCADPKSNLSPSSSFRGDNWSMLPNDSRNKPTDINVSLPRA | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 68725230 | 68729258 | + | Sed0002526.1 | Sed01g3958 | 703262 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3958 | 315 | CDD | DUF296 | 131 | 222 | IPR005175 | - | |
Sed01g3958 | 315 | FunFam | AT-hook motif nuclear-localized protein 1-like | 132 | 263 | - | - | |
Sed01g3958 | 315 | MobiDBLite | consensus disorder prediction | 279 | 308 | - | - | |
Sed01g3958 | 315 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
Sed01g3958 | 315 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 21 | 294 | IPR039605 | GO:0003680(InterPro) | |
Sed01g3958 | 315 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 132 | 245 | IPR005175 | - | |
Sed01g3958 | 315 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 129 | 249 | - | - | |
Sed01g3958 | 315 | ProSiteProfiles | PPC domain profile profile. | 127 | 269 | IPR005175 | - | |
Sed01g3958 | 315 | Gene3D | - | 132 | 261 | - | - | |
Sed01g3958 | 315 | MobiDBLite | consensus disorder prediction | 29 | 51 | - | - | |
Sed01g3958 | 315 | MobiDBLite | consensus disorder prediction | 269 | 315 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3958 | Sed-Chr1:68725230 | Sed05g0863 | Sed-Chr5:6958647 | 1.50E-147 | dispersed | |
Sed01g3955 | Sed-Chr1:68666267 | Sed01g3958 | Sed-Chr1:68725230 | 6.50E-19 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3958 | - | - | - | 0.0 |