Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3958 ATGGAGGGAAGAGATGGTGGTGCAAGTAGTGGGGTTACTGTGGTGGGATCAGATGCTCCGTCGGAATACCAAATAGCTCCGAGAACCACCGATAATCCTCCGCCGCCACCGCCTCCGCCGGCGAATCAACCAGCTTCGACTCAGCCGCCCACGCCGGCGTCGTCTGTTCCGGTAAAGAAGAAAAGAGGGCGCCCGAGAAAATATGGACCAGATGGCTCTGTCAATATGGCTCTGTCTCCGAAGCCGATATCGTCGTCGGTGCCGCCGCCGGTGATCGATTTCTCGACGGAGAAAAGGGGGAAAGTCCGGCCGGTGAGCGCTGTGAGCAAAAGCAAGTTTCAAGTGGACAATTTAGGCGACTGGGTTCCGTGTTCTGTCGGTGCAAATTTTACACCTCATATCATCACTGTCAACACGGGCGAGGATGTCACAATGAAGATAATATCCTTTTCCCAACAAGGGCCTCGAGCTATATGCATTTTGTCTGCAAACGGTGTGATCTCAAGTGTCACTCTCCGTCAGCCTGATTCCTCTGGAGGAACATTAACATATGAGGGTCGATTCGAAATCCTGTCCTTGTCTGGCTCATTCATGCCTAGTGATAATGGAGTAACTAGGAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGCCGCGTTGTAGGTGGCGGAGTAGCTGGTTTGTTAGTAGCTGCTAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACATGAGCAGAAACCTAAAAAGCCAAAGCAAGATACTGTTCCAACGGCCCTGCCAACTGCTGCCATTCCGATATCTTGTGCCGATCCTAAGTCCAACCTCTCGCCCTCCAGCTCCTTTCGTGGCGATAACTGGTCGATGCTTCCAAATGATTCAAGAAACAAGCCAACTGATATTAATGTGTCCCTACCCAGGGCTTGA 948 51.05 MEGRDGGASSGVTVVGSDAPSEYQIAPRTTDNPPPPPPPPANQPASTQPPTPASSVPVKKKRGRPRKYGPDGSVNMALSPKPISSSVPPPVIDFSTEKRGKVRPVSAVSKSKFQVDNLGDWVPCSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGVTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKQDTVPTALPTAAIPISCADPKSNLSPSSSFRGDNWSMLPNDSRNKPTDINVSLPRA 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68725230 68729258 + Sed0002526.1 Sed01g3958 703262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3958 315 CDD DUF296 131 222 IPR005175 -
Sed01g3958 315 FunFam AT-hook motif nuclear-localized protein 1-like 132 263 - -
Sed01g3958 315 MobiDBLite consensus disorder prediction 279 308 - -
Sed01g3958 315 MobiDBLite consensus disorder prediction 1 90 - -
Sed01g3958 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 21 294 IPR039605 GO:0003680(InterPro)
Sed01g3958 315 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 245 IPR005175 -
Sed01g3958 315 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 249 - -
Sed01g3958 315 ProSiteProfiles PPC domain profile profile. 127 269 IPR005175 -
Sed01g3958 315 Gene3D - 132 261 - -
Sed01g3958 315 MobiDBLite consensus disorder prediction 29 51 - -
Sed01g3958 315 MobiDBLite consensus disorder prediction 269 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3958 Sed-Chr1:68725230 Sed05g0863 Sed-Chr5:6958647 1.50E-147 dispersed
Sed01g3955 Sed-Chr1:68666267 Sed01g3958 Sed-Chr1:68725230 6.50E-19 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3958 - - - 0.0