Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3969 ATGCCGGCCGGAAAATATCTTCTCTATTCATTCCTCTGTATAACCACCGCCGTTGCTCTGTTTTTCACTTGGCTCAACCTCCCCTCTCCGCCGCCGAACGCCGCCGAGCTTCTCGACTGCCCGGCCTACTCCCCCCGATGCACTTCCAAATCCACCACGCTCAACCCCACGCGCCGCCGTACCCACGCCGCCGACATCCCCCACCACCCTCTCGACCCACTCACCGTCCAAGAAATCAACAGAGTCCGTTCAATCCTCACCGTCCATCCTCTCTTCAAATCGTCTCCGTTTTCAATCCACTCCTTAATCCTCGAAGAACCCCCCAAATCCCTCGTCCTCAAATGGCAAAACGGCGATACGCTGCCTCCAAGACAGGCCTCTGTAATCGCACGTGTCGACGGGAAATCCCACGTGCTAACCGTCGATCTCACCACCGCCCACGTCGCCATCCTCCGAACCGGCCCACATTCCGGTTACCCGACGATGACGATTGAAGAGATGAACTCCGCCACGTGGGTCCCGATGAAGAGCGAGAAATTCAATCAAACGATTCTCGACCGTGGGATTTCCCTCTCCGATCTGTCCTGTTTGCCGATCTCGACCGGCTGGTTCGGCGCCGGCGAGGAGAATCGCCGGCTGATCAAAGTCCAGTGCTACTCCATGAAAGACACCGCCAATTTCTACATGAGACCCATCGAAGGGTTGACCGTCCTTGTTGACTTAGACACTCAACAAGTAATCGAAATTTCCGACAAGGGGAAAAACATCCCGATTCCGGCAGCCGCCAACACCGATTACCGATTCTCAGCCCAGTCGCCGAACCGGGTCGTGAAATTACTGAACCCGATTTCGATTGAGCAACCGCAGGGGCCGAGTTTTACGGTGGAGGACGAGTATTTGGTGAAATGGGCGAATTGGGAATTTCACCTGAAACCCGACCCGAGAGCCGGGATTGTGATATCTCGGGCTAAAGTTGGGGACCCGGAAACGGGGGATTTGAGGGATGTTATGTACAAGGGGTTTACGTCAGAGCTGTTTGTACCGTATATGGACCCGTCGGATGCTTGGTATTTCAAGACGTATATGGATGCGGGCGAATACGGGTTCGGGTTGCAGGCCATGGGTCTTGACCCGCTCAATGATTGCCCGAGAAATGCTTATTATATGGACGGGGTTTTTGTGGCGGTGGACGGAAAGCCGTACGTGCGGCGGAATATGATCTGTTTGTTCGAGAAATACGCCGGCGATATTGGGTGGCGACATGCTGAAAGTCCAATCACCGGCTTGGATATAACAGAGGTGAGGCCGAAGGTGACACTTGTGGCGAGAATGGCTGCATCTGTTGCCAATTATGATTATATTGTCGATTGGGAGTTCCAAACCGATGGACTTATCAGAATCAAGGTGGGTTTGAGTGGGATTTTGATGGTGAAAGGCACATCTTACAAGAACACAAACCAATTCGCCGGAGAAGAACTCTACGGCACACTCTTATCGGAAAATGTCATCGGAGTAATCCACGACCATTACATAACATTCTATTTGGACATGGACATTGACGGCTCCGACAACTCCTTTGTAAAAGTAAATCTCCAAAGGCAAATGACTTCGAAAGGAGAATCTCCTAGAAAAAGTTACCTTAAAGCCGTCAAAAAGGTTGCAAAAACCGAGAAAGATGCTCAAATTAAACTCAAATTGTACGACCCGGCCGAGTTTCATGTCGTGAACCCTTCGGTGAAGACTCGGGTCGGTAACCCGGTCGGGTACAAGGTGGTTCCGGCCGCCACCGCTGCCAGTTTGCTGGATTTGGACGATCCGCCGCAGAGGAGAGGAGCCTTTACGAATAATCAGATATGGGTTACCCCGTATAACCGGACCGAGGAGTGGGCCGGCGGCCGGTTCGTTTACCAGAGCCATGGTGAGGATACGCTTCAAACTTGGTCCGACCGGGATCGATCCATCGAAAACACAGACATAGTTGTATGGTACACATTAGGGTTCCATCACGTACCATGCCAAGAAGATTTTCCGATCATGCCGACCGTGTCGGCGAGTTTCGATTTGAAGCCTGTAAATTTCTTTGAAAGAAATCCAATCCTTAGATTTCCACCCAACACCATGGAAGACCTTCCTGTTTGCAAGGCTGCTGCTTCGGCTTGA 2160 51.94 MPAGKYLLYSFLCITTAVALFFTWLNLPSPPPNAAELLDCPAYSPRCTSKSTTLNPTRRRTHAADIPHHPLDPLTVQEINRVRSILTVHPLFKSSPFSIHSLILEEPPKSLVLKWQNGDTLPPRQASVIARVDGKSHVLTVDLTTAHVAILRTGPHSGYPTMTIEEMNSATWVPMKSEKFNQTILDRGISLSDLSCLPISTGWFGAGEENRRLIKVQCYSMKDTANFYMRPIEGLTVLVDLDTQQVIEISDKGKNIPIPAAANTDYRFSAQSPNRVVKLLNPISIEQPQGPSFTVEDEYLVKWANWEFHLKPDPRAGIVISRAKVGDPETGDLRDVMYKGFTSELFVPYMDPSDAWYFKTYMDAGEYGFGLQAMGLDPLNDCPRNAYYMDGVFVAVDGKPYVRRNMICLFEKYAGDIGWRHAESPITGLDITEVRPKVTLVARMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTSYKNTNQFAGEELYGTLLSENVIGVIHDHYITFYLDMDIDGSDNSFVKVNLQRQMTSKGESPRKSYLKAVKKVAKTEKDAQIKLKLYDPAEFHVVNPSVKTRVGNPVGYKVVPAATAASLLDLDDPPQRRGAFTNNQIWVTPYNRTEEWAGGRFVYQSHGEDTLQTWSDRDRSIENTDIVVWYTLGFHHVPCQEDFPIMPTVSASFDLKPVNFFERNPILRFPPNTMEDLPVCKAAASA 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68825927 68832078 + Sed0000044.1 Sed01g3969 703273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3969 719 Gene3D Copper amine oxidase, catalytic domain 276 711 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed01g3969 719 Pfam Copper amine oxidase, N3 domain 160 259 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed01g3969 719 Gene3D - 161 255 - -
Sed01g3969 719 Gene3D - 67 160 - -
Sed01g3969 719 FunFam Amine oxidase 161 255 - -
Sed01g3969 719 SUPERFAMILY Amine oxidase N-terminal region 158 267 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed01g3969 719 SUPERFAMILY Amine oxidase catalytic domain 275 708 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed01g3969 719 PANTHER COPPER AMINE OXIDASE 64 713 IPR000269 GO:0005507(PANTHER)|GO:0005507(InterPro)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(PANTHER)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed01g3969 719 SUPERFAMILY Amine oxidase N-terminal region 67 149 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed01g3969 719 ProSitePatterns Copper amine oxidase copper-binding site signature. 664 677 IPR049947 -
Sed01g3969 719 FunFam Amine oxidase 293 711 - -
Sed01g3969 719 Pfam Copper amine oxidase, enzyme domain 284 699 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed01g3969 719 Pfam Copper amine oxidase, N2 domain 69 149 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3969 K00276 - - csv:101212818 1295.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3969 Sed-Chr1:68825927 Sed04g1902 Sed-Chr4:33753652 1.80E-172 dispersed
Sed01g3968 Sed-Chr1:68817221 Sed01g3969 Sed-Chr1:68825927 4.10E-238 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011676 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30