Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g3970 | ATGAAACTCATCTCCAGCTTCCTCCAAACTCTGAACTCATTTTTTCCATGGCACTCCATCATCAACCATCACCCCTTTCTTTTCACCCTCCTCGCCGGTTTATTCCTCCTTTTAATATTCCTCCGCCTCCAACCACGGCGGCGCTCGCGGCTGCCGCCGGGTCCCCGGGGTGTTCCCCTGCTCGGAAACCTCCCCTTCTTAGATCCAGAGCTCCACACCCACTTCACACAATTAGCCCAAAAACACGGCCCAATCGTAAAGCTCCAACTCGGCACAAAAATGGGCATAATCGTAAACTCACCGTCCGCGGCACGTGAGATCTTGAAAGACCACGACGTCACGTTCTCCAATCGCGACGCCCCACAGGCGGGCAGAGCCGCCACGTACGGCGGCGCCGACATCGTCTGGGCGTCGTACGGACCCGAATGGCGGATGATGAGAAAGGTTTGTACGGTGAAGATGCTCGGCAGCGCCCAGTTGGAGTCGGTGCACGAGCTCCGGCGCAGAGCGGTGAGAGACACGGTGGCGCACCTGTACCGGCGAGTCGGGACGGCGGTGAACGTGGGGGAGCAGGGGTTTCTGACGGTCTACAACATCGTGACGGGGATGTTGTGGGGCGGGACGGTGGACGGGGAGGAACGGGACGGGGTTGCGGCGGAGTTCAGAGAATTGGTTTCCGACATAACGGAGCTTTTGGGCAGGCCTAATGTTTCTGATTTTTTCCCCTGTTTGGCTCCGTTTGATCTCCAGGGCGTTGAGAAGCAAATGCTTAAGCTGGTTGCGAAGCTGGATGACATCTTCGAAAAGATGATTGATGAGCGATTGAGAATTGGCGATGGGAATAGAAATGATTTCTTGCAGTTCTTGCTCGATGTTAAGGATGAAGGGGATTCCAAAACGCCTCTCACTATGCTTCAACTCAAAGCCCTGCTCATGGATATGGTGATAGGAGGAACAGACACATCCTCAAACACCATCGAATTCGCCATGGCAGAGATAATGAAAAACCCAGAAGTAGCAAAGAAAGTCCAACAAGAGCTAACCACAGTCATAGGAGAAGACAACATCGTAGAAGAGTCCCACATACACAGCCTGCCCTATCTCAAAGCCGTGGTGAAAGAAACGTTGCGTTTACATCCAGTTTTGCCGCTGATGGTACCGCACTCCCCGAGCGAGACAACGATCGTGTCGAACTACGCAATCCCAAAGGGTTCTCGGGTGTTCATCAATGTCTGGGCCATTCATCGAGACCCCAAGGAATGGGAGAATCCATTGGTGTTCGACCCGGAAAGGTTCATGCAGGACAGTAAGTTCGATTTTAGTGGGAGTGATTTTCGTTTTATTCCGTTTGGTTCTGGGAGAAGGAACTGTGCGGGGATTGGGTTGGCGGAGAGAATGGTTATGTATTTGCTTGCTACGTTTCTGCACTCGTTTGATTGGAAGTTGAAAGAAGGTGAGAAATTGGAGACTGATGAGAAATTTGGGATTGTTTTGAAGATGAAGACACCTCTTGTTGCTATGTTCACGCCTCGGCTATCTGACCCTACTATGTATCAATAA | 1560 | 51.92 | MKLISSFLQTLNSFFPWHSIINHHPFLFTLLAGLFLLLIFLRLQPRRRSRLPPGPRGVPLLGNLPFLDPELHTHFTQLAQKHGPIVKLQLGTKMGIIVNSPSAAREILKDHDVTFSNRDAPQAGRAATYGGADIVWASYGPEWRMMRKVCTVKMLGSAQLESVHELRRRAVRDTVAHLYRRVGTAVNVGEQGFLTVYNIVTGMLWGGTVDGEERDGVAAEFRELVSDITELLGRPNVSDFFPCLAPFDLQGVEKQMLKLVAKLDDIFEKMIDERLRIGDGNRNDFLQFLLDVKDEGDSKTPLTMLQLKALLMDMVIGGTDTSSNTIEFAMAEIMKNPEVAKKVQQELTTVIGEDNIVEESHIHSLPYLKAVVKETLRLHPVLPLMVPHSPSETTIVSNYAIPKGSRVFINVWAIHRDPKEWENPLVFDPERFMQDSKFDFSGSDFRFIPFGSGRRNCAGIGLAERMVMYLLATFLHSFDWKLKEGEKLETDEKFGIVLKMKTPLVAMFTPRLSDPTMYQ | 519 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 68837036 | 68839662 | - | Sed0005075.1 | Sed01g3970 | 703274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g3970 | 519 | FunFam | Predicted protein | 315 | 506 | - | - | |
| Sed01g3970 | 519 | SUPERFAMILY | Cytochrome P450 | 52 | 511 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | Pfam | Cytochrome P450 | 52 | 503 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | P450 superfamily signature | 370 | 381 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | P450 superfamily signature | 317 | 334 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | P450 superfamily signature | 457 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | P450 superfamily signature | 448 | 457 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | E-class P450 group I signature | 306 | 323 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | E-class P450 group I signature | 326 | 352 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | E-class P450 group I signature | 79 | 98 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | E-class P450 group I signature | 195 | 213 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | E-class P450 group I signature | 369 | 387 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | E-class P450 group I signature | 103 | 124 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | E-class P450 group I signature | 447 | 457 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | E-class P450 group I signature | 457 | 480 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | PRINTS | E-class P450 group I signature | 410 | 434 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | Gene3D | Cytochrome P450 | 44 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g3970 | 519 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 450 | 459 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed01g3970 | 519 | CDD | CYP76-like | 79 | 506 | - | - | |
| Sed01g3970 | 519 | PANTHER | OS08G0547900 PROTEIN | 27 | 519 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g3970 | Sed-Chr1:68837036 | Sed05g0854 | Sed-Chr5:6803491 | 1.80E-89 | dispersed | |
| Sed02g0944 | Sed-Chr2:47001518 | Sed01g3970 | Sed-Chr1:68837036 | 1.00E-17 | dispersed | |
| Sed01g3970 | Sed-Chr1:68837036 | Sed01g3971 | Sed-Chr1:68846365 | 2.90E-64 | tandem | |
| Sed01g3970 | Sed-Chr1:68837036 | Sed05g0877 | Sed-Chr5:7039009 | 5.40E-211 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g3970 | - | - | - | 0.0 |