Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3988 ATGGTGAAATTGGCTTTTGGATCCGCCGCTGACTCGTTCAGTGCGGCTTCTCTTAAAGCTTATCTCTCTGAGTTCATCGCCACTCTCCTTTTCGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTATGGTAAGTTGACGTCCGATGCAGCGTTGGACCCACCAGGTCTGGTGGCCGTGGCCGTGGCTCATGCATTCGGTCTGTTCGTGGGCGTGTCGATGGCCGCGAACATCTCCGGTGGGCACCTGAACCCGGCAGTGACCTTCGGGTTGGCGATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATTGCCCAGTTGCTTGGCTCCACTGTTGCCTGCCTTCTCCTCCAGTTCGTTACCAACGGCAAGAGCATCCCGACCCACGGCGTGGCAGCGGGATTGGGAGCGATCGAAGGGGTCGTATTCGAGATAATAATCACCTTCGGGCTCGTGTACACAGTCTACGCTACAGCCGCAGATCCCAAAAAGGGATCTCTTGGAACCATAGCCCCAATTGCCATTGGCTTCATTGTCGGAGCCAACATCCTGGCTGCCGGCCCATTTAGCGGCGGGTCCATGAACCCGGCCCGTTCCTTCGGCCCAGCTGTTGTCAGCGGAGACTTCTCTCAGATCTGGATCTACTGGGTCGGCCCACTAATTGGTGGTGGGCTTGCTGGGCTTATCTATGGCGATGTCTTTATTGGCTCTTATGCTTCTGTTCCAGTCTCTGCTGATTATGCTTAA 753 56.71 MVKLAFGSAADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFGLFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSTVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFIGSYASVPVSADYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68982161 68985521 - Sed0005733.1 Sed01g3988 703292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3988 250 FunFam Probable aquaporin TIP1-1 2 249 - -
Sed01g3988 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3988 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3988 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3988 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3988 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3988 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3988 250 PANTHER AQUAPORIN-8 4 238 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Sed01g3988 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3988 250 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3988 250 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
Sed01g3988 250 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Sed01g3988 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3988 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1269 Sed-Chr1:9472028 Sed01g3988 Sed-Chr1:68982161 6.70E-58 dispersed
Sed01g3988 Sed-Chr1:68982161 Sed09g1598 Sed-Chr9:39474023 2.50E-97 dispersed
Sed01g3988 Sed-Chr1:68982161 Sed03g2041 Sed-Chr3:14307620 8.20E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3988 K09873 - csv:101203925 456.062