Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3995 ATGGAATCTTTCAAAACATTCTCATTTTTGTTCATTTCTCTTCTAATTCTGTCAACTGCTCAAGCAATGATTTCGTCTTCAACCGCCGCCCAACGCCGCCGCCACAAGTGGGTCGGCCCGACCGGCCACCGCCTCATCAAAGTCGACGTTAACGGCTCCGCCGAGTTCCGTACCGTTCAGGCCGCCGTCGATGCAGTCCCGGATTATAACACCGTCAGCACCGTTATCCGAATCAGCCCTGGATATTATGTGGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTACATAACATTTGAAGGAGGAGGGAAAGAGCGGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAGCTCCGTACTTACAGAACCGCCTCCGTCACCGTTTTCGCCAATTATTTCTCTGCCCGAAACATCAGCTTCAAGAATACAGCACCGGCGCCAATGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTCCGTATTTCCGGCGACAAGGCCTACTTTTCCGGCTGCGGTTTCTACGGCGCTCAGGATACGCTCTGTGACGACGCCGGCCGCCACTATTTCAAACATTGTTACATCGAAGGCTCTATTGACTTCATCTTTGGTAATGGCCGTTCCATGTATAAGGATTGCGAGCTGCACTCCATCGCCACCCGGTTCGGTTCCATAGCGGCTCAAGATAGAAGCTCCCCGGACGAGAAAACCGGGTTTGCTTTCGTCCGGTGCAAGGTGACCGGTTCAGGACCCGTGTACGTGGGCCGGGCCATGGGCCAATACTCTAGAATCGTCTACGCGCATACTTACTTTGATGACGTGGTGGCACACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAATGTTGGGGGCCAGGAGCAAGTAAAGTAAAGGGAGTATCATGGGCAAGAGAGTTGGAGTTTGAAGAGGCACATCCATTTCTTGCAAAGAGCTTTGTCAATGGCAGGCATTGGATTGCACCCTCTGATGCTTAA 1044 53.64 MESFKTFSFLFISLLILSTAQAMISSSTAAQRRRHKWVGPTGHRLIKVDVNGSAEFRTVQAAVDAVPDYNTVSTVIRISPGYYVEKVVVPATKPYITFEGGGKERTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKHCYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRSSPDEKTGFAFVRCKVTGSGPVYVGRAMGQYSRIVYAHTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVSWARELEFEEAHPFLAKSFVNGRHWIAPSDA 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69029572 69035323 - Sed0006460.1 Sed01g3995 703299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3995 347 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 19 343 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Sed01g3995 347 Gene3D - 43 346 IPR012334 -
Sed01g3995 347 FunFam Pectinesterase 41 344 - -
Sed01g3995 347 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
Sed01g3995 347 SUPERFAMILY Pectin lyase-like 43 344 IPR011050 -
Sed01g3995 347 Pfam Pectinesterase 48 338 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3995 Sed-Chr1:69029572 Sed08g0819 Sed-Chr8:6638376 9.90E-84 dispersed
Sed01g3995 Sed-Chr1:69029572 Sed12g1810 Sed-Chr12:29193164 6.90E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3995 - - - 0.0