Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4000 ATGAGTACGGGCGAACTCCTCAGCATCGAACCGGTCGAGCTCAAGTTTTCATTCGAATTGAGGAAGCAGATCTCTTGTTCCCTCCAATTGTCGAACAAGACCGACAGCTACGTTGCATATAAGGTGAAAACTACGAACCCTAAAAAGTACTGCGTTCGTCCAAATACTGGAATTGTCTCGCCGAAGTCAACATGTGAAGTTATAGTCACCATGCAAGCCCAGAAAGAGGCTCCTGCTGATATGCAATGCAAAGACAAATTCCTTCTTCAGAGTGTTAAAACTGTTGATGGTGTAACTGCAAAGGATATCAATGCAGAAATGTTCAACAAGGAGGCTGGGCATGTGGTTGAGGAATGCAAATTAAAAGTGGTTTATGTTCCTCCACCCCAACCACCTTCTCCAGTACCAGAAGGCTCTGATGAAGGATCCTCCCCGAGAGGTTCCGTTTCCGAGAATGGAAACTTCAATGATACCGAAACTGCTACAAGGGGATTTATTGAACGGTCAGAGCCTCAGGATAAATCTGCAGAGGCTAGAGCTCTCATAGCTAAGCTTACGGAAGAGAAGAATGTTGCCCTCCAACAGAATAACAAACTTCGTCATGAATTGGTAAGAGCCCAAGAGGAATGA 630 45.08 MSTGELLSIEPVELKFSFELRKQISCSLQLSNKTDSYVAYKVKTTNPKKYCVRPNTGIVSPKSTCEVIVTMQAQKEAPADMQCKDKFLLQSVKTVDGVTAKDINAEMFNKEAGHVVEECKLKVVYVPPPQPPSPVPEGSDEGSSPRGSVSENGNFNDTETATRGFIERSEPQDKSAEARALIAKLTEEKNVALQQNNKLRHELVRAQEE 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69055964 69059452 + Sed0004190.2 Sed01g4000 703304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4000 209 Gene3D Immunoglobulins 2 130 IPR013783 -
Sed01g4000 209 Coils Coil 175 209 - -
Sed01g4000 209 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 6 203 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Sed01g4000 209 PIRSF VAMP_assoc_prot 1 209 IPR016763 GO:0005789(InterPro)
Sed01g4000 209 MobiDBLite consensus disorder prediction 143 162 - -
Sed01g4000 209 FunFam Vesicle-associated protein 1-1 1 129 - -
Sed01g4000 209 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Sed01g4000 209 MobiDBLite consensus disorder prediction 127 179 - -
Sed01g4000 209 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Sed01g4000 209 MobiDBLite consensus disorder prediction 163 179 - -
Sed01g4000 209 SUPERFAMILY PapD-like 2 141 IPR008962 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4000 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4000 Sed-Chr1:69055964 Sed05g0971 Sed-Chr5:8077498 1.60E-97 dispersed
Sed01g3999 Sed-Chr1:69055964 Sed01g4000 Sed-Chr1:69055964 8.60E-111 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g368 . . . . . . . . . . Cma06g01460 Cma14g01647 Car06g01260 Car14g01480 . Cpe08g00218 Cpe03g01391 Bhi01g00928 Tan10g0943 . . . . . . . . . . . . . . . . Lsi05g01497 . . Cme06g00685 . . Bda11g00542 . . Bpe13g00647 . Bma06g01519 Sed01g4000 Cmo06g01461 Cmo14g01691 . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . . Csa03g01409 Chy06g00652 .
Vvi5g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g4000 . . . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . Lsi09g01624 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83