Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4010 ATGAAGGTCAAGGAAATGCATCCACTCTGCTGCATCTCCGTCGAGAGTTTCGGAATCGGCGGCGATGCATCAGATCATCCACAGTCGCCGGCGACGACGGCGGCGGTGACTCCTCTCTCCAGGACGAAGAGCATGCCGGCGAGTTTGGCCGCCTTCTCCTCCGACGGATCTGACGGGAACCATAACAATGGCACGATCACATCATGCCCGCCGGGATCCAAATCCACCGTCGCCGGTGTTCTTCATAAGTGGACTAATTACGGTAAAGGATGGAGATCTAGATGGTGTCTTCTCCGTAATGGCGTTTTGTCTTATGCGAAGATTCGCCGCCCGGAGAATCTCGATCTTCTTGCTTCGATCGACGACGTGCAGTTGATCGGAGAGATCTCGAGGGGCGATGAGAAAGGCGGAGCGCGGCGGAAGCATCAGAAAGCTGTGGGAGTTGTTCATCTTAAGATCACATCTTTTCGAGAGAGCAAGTCGGATGATAGGAAGTTTTATATAAGCACTGCTACAAAGACTCTTCATTTGAGAACTAATTCAAAGAGTGACCGAGCGGCTTGGATTCAAGCTTTGGCATCTAGTCGCAACATAGGTCCTCTAACAACACTGAATTATAATCTCTCCCCCACGCCGAGTGATTTATCGGTATCGACTGACAGACTGAAGAAGCGTTTAATTGAAGAGGGAATCAGTGAAACTTTAGTAGAGGATTGTGAACAGATAATGCTTTCCGAATTTTCAGAAATTCAAGGGCATCTTCAAGTTCTATGTGAAGAGCGATCTAACTTGCTTGATACAATCAGGCAGTTAGAGGCTGCTAGTTTTGAAGTTGAACCTTCTGGAATGAATGATCGAGAATTTCAACTGACGAAGCATGATCTTTCCTCCGAAGAACGTGGAAAATATAGTGAATGCAGCACCACGGAATCATCAGATGATATCGAGAAACAAGAGCTGGAGGAGGAGGTTTCGGATGAAGACGAAGTGCCCTTTCATGACACCAGAGATTCTTTCTCTGAAAATTATGTTGATGACAGGCCGTGTAGAGTAGGAGGTTTAGATGATGGAGTTAATGATAGCAGTAAGGCTGAAAGTCATTCGATTGACAATGCTTCGCATATTCAAAGGCGTAAACATCTTCCTGATCCAGTGGAGAAGGAGAAACGAGTCAGCCTTTGGTCAATGATCAAAGACAATGTAGGAAAAGATTTGACAAAAGTATGCCTCCCTGTTTACTTCAATGAGCCGATATCATCGCTGCAGAAATGCTGTGAAGATATGGAGTATACATATCTATTGGACCAGGCATACGAGCAAGGAAAACAGGGAAATAGTCTACAAAGAATTCTCAATGTTGCAGCATTTGCAGTTTCGGGGTACGCTTCGTCAGAAGGAAGGCATTGCAAACCATTCAATCCTCTGTTGGGGGAAACTTATGAAGCCGATTTTCCAGAGAAAGGGATTCGGTTCTTCTCCGAGAAGGTGAGTCACCACCCAACTCTGATAGCATGCCATTGTGAAGGGAGAGGGTGGAAGTTTTGGGGAGATAGCAACCTTCAGTCCAAATTCTGGGGAAGATCAATTCAGCTGGACCCTGTTGGAGTTCTCACACTTCAGTTTGATGATGGTGAAATCTTTCAGTGGAGCAAGGTAACAACAAGTATCTACAATCTCATCCTTGGGAAAATATATTGTGATCATCATGGAACCATGCATATACGTGGTAATAGGGACTATTCATGCACCCTCAAGTTCAAAGAGCAATCATTTCTCGACCGAAATCCACATCAGGTTCATGGATATGTTGAAGATGTTGCCCGGAAAAAAGTTGCTACGTTATTTGGGAAGTGGGACGAGAGCATGTATTATGTGAATGGCAATGGGAATGTAAATTTGAAGAGTTGTGATGGTACTTTGTTGTGGAAAAGCAACGAACCACCGCAGAATCCGACTCGGTACAACTTGACTTCATTTGCGATCACGTTGAATGAGCTGACACCAGGGCTCAAGGAGATGCTCCCTCCCACGGATTCCAGACTCCGACCAGACCAGCGACATCTGGAGAATGGCGAGTACGATAAGGCCAATGCAGAGAAGCTACGATTGGAACAAAGGCAAAGAATTTCGAGGAAGTTACAAGAGGACGGTTGGAAGCCGAGATGGTTTCATCGAGAGGGTGAAGATGGATCGTTTAAATATATTTGGAGAATTGAATCAGGAGATTGGCGAATTAAGAGATTAGAGGATTATCAGGATTCAGATCATAGGGAGGTAGGATTAAACGAAGACCCTCGAGATCGATCAATGGAGCAACTACGAGAATCGGCGGATTGGAACAAGAAGAAAGATTTATGA 2358 45.42 MKVKEMHPLCCISVESFGIGGDASDHPQSPATTAAVTPLSRTKSMPASLAAFSSDGSDGNHNNGTITSCPPGSKSTVAGVLHKWTNYGKGWRSRWCLLRNGVLSYAKIRRPENLDLLASIDDVQLIGEISRGDEKGGARRKHQKAVGVVHLKITSFRESKSDDRKFYISTATKTLHLRTNSKSDRAAWIQALASSRNIGPLTTLNYNLSPTPSDLSVSTDRLKKRLIEEGISETLVEDCEQIMLSEFSEIQGHLQVLCEERSNLLDTIRQLEAASFEVEPSGMNDREFQLTKHDLSSEERGKYSECSTTESSDDIEKQELEEEVSDEDEVPFHDTRDSFSENYVDDRPCRVGGLDDGVNDSSKAESHSIDNASHIQRRKHLPDPVEKEKRVSLWSMIKDNVGKDLTKVCLPVYFNEPISSLQKCCEDMEYTYLLDQAYEQGKQGNSLQRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPTLIACHCEGRGWKFWGDSNLQSKFWGRSIQLDPVGVLTLQFDDGEIFQWSKVTTSIYNLILGKIYCDHHGTMHIRGNRDYSCTLKFKEQSFLDRNPHQVHGYVEDVARKKVATLFGKWDESMYYVNGNGNVNLKSCDGTLLWKSNEPPQNPTRYNLTSFAITLNELTPGLKEMLPPTDSRLRPDQRHLENGEYDKANAEKLRLEQRQRISRKLQEDGWKPRWFHREGEDGSFKYIWRIESGDWRIKRLEDYQDSDHREVGLNEDPRDRSMEQLRESADWNKKKDL 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69135237 69141926 - Sed0020098.1 Sed01g4010 703314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4010 785 ProSiteProfiles PH domain profile. 74 197 IPR001849 -
Sed01g4010 785 MobiDBLite consensus disorder prediction 292 384 - -
Sed01g4010 785 FunFam oxysterol-binding protein-related protein 1D isoform X1 478 646 - -
Sed01g4010 785 Coils Coil 254 274 - -
Sed01g4010 785 Gene3D - 685 784 - -
Sed01g4010 785 MobiDBLite consensus disorder prediction 754 785 - -
Sed01g4010 785 Pfam Oxysterol-binding protein 392 745 IPR000648 GO:0008289(InterPro)
Sed01g4010 785 MobiDBLite consensus disorder prediction 329 353 - -
Sed01g4010 785 SUPERFAMILY PH domain-like 64 206 - -
Sed01g4010 785 SUPERFAMILY Oxysterol-binding protein-like 387 753 IPR037239 -
Sed01g4010 785 MobiDBLite consensus disorder prediction 292 314 - -
Sed01g4010 785 Pfam Pleckstrin homology domain 83 193 - -
Sed01g4010 785 Gene3D - 478 653 - -
Sed01g4010 785 SMART PH_update 75 199 IPR001849 -
Sed01g4010 785 MobiDBLite consensus disorder prediction 370 384 - -
Sed01g4010 785 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 74 730 IPR000648 GO:0005829(PANTHER)|GO:0008289(InterPro)|GO:0015248(PANTHER)|GO:0016020(PANTHER)|GO:0032934(PANTHER)|GO:0043231(PANTHER)
Sed01g4010 785 MobiDBLite consensus disorder prediction 49 71 - -
Sed01g4010 785 Gene3D - 71 198 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4010 K20456 - - csv:101216432 1214.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4010 Sed-Chr1:69135237 Sed03g0830 Sed-Chr3:4959624 2.20E-224 dispersed
Sed03g1248 Sed-Chr3:8005186 Sed01g4010 Sed-Chr1:69135237 2.30E-254 transposed
Sed01g4010 Sed-Chr1:69135237 Sed05g0979 Sed-Chr5:8134899 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g465 . . . . Bpe05g00608 Bpe07g00142 . . Cmo06g01155 . . Cma15g01175 . Car15g01063 Sed01g4010 . . Bhi11g00213 Tan01g2011 Cmetu09g1807 . . Mch10g1540 . . . . . . . . . . . . . Csa05g00361 Chy09g01146 . Blo03g00383 . Bda07g00512 . . Bpe11g00699 Bma05g00788 Bma12g00127 . . Cmo15g01236 Cma06g01130 . Car06g00967 . . Cpe13g00199 Bhi12g00359 . . Lac11g2192 Hepe06g1622 . Lcy12g1745 Cla01g00339 Cam01g0352 Cec01g0348 Cco01g0360 Clacu01g0356 Cmu01g0336 Cre09g2174 Lsi09g00365 . . Cme09g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88