Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4021 ATGTCATCCTCTTCTTCTTCTACTACTACTCAGCTGGACCACCCCCTTCACTCACCTGAGCAGCTCTGTTATGTTCATTGCAACATTTGTGACACTGTTCTTGCGGTGAGTGTTCCTTGCTCTAGCTTGTTCAAGACTGTGACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCTTGCTTTTGCCTTCTACTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCACAACATTCTGGATCAAAACATTCCAACTCCGAATTCCAATTATCTCATGAACCAGTTTGCAGCTAATAATTTTGGAATGCCTTCTCGAGGACTCACTGATGAGCTCCCTAGGCCGCCAGTCATCAACAGACCTCCAGAGAAGAGACAGAGAGTGCCTTCTGCTTATAACCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACCGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACATATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATCAGAATGTTGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 663 46.76 MSSSSSSTTTQLDHPLHSPEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSTNQFHQLGHSFFSPSHNILDQNIPTPNSNYLMNQFAANNFGMPSRGLTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVVLMKDNGFYASANVGVSHF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69254375 69257596 + Sed0005272.1 Sed01g4021 703325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4021 220 Pfam YABBY protein 18 181 IPR006780 GO:0007275(InterPro)
Sed01g4021 220 PANTHER PROTEIN YABBY 6-RELATED 18 190 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Sed01g4021 220 CDD HMG-box_SF 135 171 - -
Sed01g4021 220 Gene3D High mobility group box domain 126 195 IPR036910 -
Sed01g4021 220 FunFam Axial regulator YABBY 126 197 - -
Sed01g4021 220 SUPERFAMILY HMG-box 125 174 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4021 K25796 - - csv:101214748 392.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4021 Sed-Chr1:69254375 Sed03g1256 Sed-Chr3:8067850 1.40E-62 dispersed
Sed01g4021 Sed-Chr1:69254375 Sed01g4022 Sed-Chr1:69254375 5.90E-90 tandem
Sed07g2037 Sed-Chr7:35501300 Sed01g4021 Sed-Chr1:69254375 4.70E-32 transposed
Sed01g4021 Sed-Chr1:69254375 Sed05g0986 Sed-Chr5:8360224 1.30E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2037 . 1 182 C2C2-YABBY Transcription Factor Family AT1G69180 51.4 2.4e-44 176.4
Sed01g4021 . 62 220 C2C2-YABBY Transcription Factor Family AT2G45190 59.1 1.2e-42 170.6
Sed01g4022 . 1 159 C2C2-YABBY Transcription Factor Family AT2G45190 59.1 1.2e-42 170.6
Sed05g0986 . 69 234 C2C2-YABBY Transcription Factor Family AT2G45190 57.2 2.9e-41 166.0
Sed01g3224 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 68.8 2.1e-56 216.5
Sed01g4021 . 18 210 C2C2-YABBY Transcription Factor Family AT1G08465 52.8 9.1e-44 174.5
Sed12g2369 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 2.0e-43 173.3
Sed08g0677 . 6 179 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 2.9e-42 169.5
Sed05g0986 . 25 224 C2C2-YABBY Transcription Factor Family AT1G08465 50.5 5.0e-42 168.7
Sed08g0678 . 6 164 C2C2-YABBY Transcription Factor Family AT1G08465 54.9 1.1e-41 167.5
Sed11g0122 . 5 179 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.5e-41 166.4
Sed11g0124 . 5 179 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.5e-41 166.4
Sed10g1447 . 8 177 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 3.2e-41 166.0
Sed01g4021 . 29 219 C2C2-YABBY Transcription Factor Family AT4G00180 56.9 6.7e-51 198.4
Sed05g0986 . 36 233 C2C2-YABBY Transcription Factor Family AT4G00180 53.7 5.3e-48 188.7
Sed01g4022 . 1 158 C2C2-YABBY Transcription Factor Family AT4G00180 54.7 1.4e-37 154.1
Sed04g0622 . 1 171 C2C2-YABBY Transcription Factor Family AT1G23420 51.4 1.3e-40 164.5
Sed08g0677 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.4 3.9e-62 235.3
Sed08g0678 . 8 160 C2C2-YABBY Transcription Factor Family AT2G26580 74.8 8.7e-62 234.2
Sed12g2369 . 7 169 C2C2-YABBY Transcription Factor Family AT2G26580 73.0 1.1e-61 233.8
Sed11g0122 . 9 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.3e-61 232.3
Sed11g0124 . 9 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.3e-61 232.3
Sed10g1447 . 10 168 C2C2-YABBY Transcription Factor Family AT2G26580 73.8 1.3e-60 230.3
Sed11g0123 . 4 147 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 4.0e-51 198.7
Sed01g3224 . 1 169 C2C2-YABBY Transcription Factor Family AT2G26580 60.9 3.2e-48 189.1
Sed01g4021 . 20 182 C2C2-YABBY Transcription Factor Family AT2G26580 55.0 1.1e-43 174.1
Sed05g0986 . 25 197 C2C2-YABBY Transcription Factor Family AT2G26580 54.3 1.4e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37424 PF04690 YABBY 3.50E-71 CL0114 Sed TF