Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4021 ATGTCATCCTCTTCTTCTTCTACTACTACTCAGCTGGACCACCCCCTTCACTCACCTGAGCAGCTCTGTTATGTTCATTGCAACATTTGTGACACTGTTCTTGCGGTGAGTGTTCCTTGCTCTAGCTTGTTCAAGACTGTGACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCTTGCTTTTGCCTTCTACTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCACAACATTCTGGATCAAAACATTCCAACTCCGAATTCCAATTATCTCATGAACCAGTTTGCAGCTAATAATTTTGGAATGCCTTCTCGAGGACTCACTGATGAGCTCCCTAGGCCGCCAGTCATCAACAGACCTCCAGAGAAGAGACAGAGAGTGCCTTCTGCTTATAACCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACCGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACATATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATCAGAATGTTGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 663 46.76 MSSSSSSTTTQLDHPLHSPEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSTNQFHQLGHSFFSPSHNILDQNIPTPNSNYLMNQFAANNFGMPSRGLTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVVLMKDNGFYASANVGVSHF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69254375 69257596 + Sed0005272.1 Sed01g4021 703325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4021 220 Pfam YABBY protein 18 181 IPR006780 GO:0007275(InterPro)
Sed01g4021 220 PANTHER PROTEIN YABBY 6-RELATED 18 190 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Sed01g4021 220 CDD HMG-box_SF 135 171 - -
Sed01g4021 220 Gene3D High mobility group box domain 126 195 IPR036910 -
Sed01g4021 220 FunFam Axial regulator YABBY 126 197 - -
Sed01g4021 220 SUPERFAMILY HMG-box 125 174 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4021 Sed-Chr1:69254375 Sed03g1256 Sed-Chr3:8067850 1.40E-62 dispersed
Sed01g4021 Sed-Chr1:69254375 Sed01g4022 Sed-Chr1:69254375 5.90E-90 tandem
Sed07g2037 Sed-Chr7:35501300 Sed01g4021 Sed-Chr1:69254375 4.70E-32 transposed
Sed01g4021 Sed-Chr1:69254375 Sed05g0986 Sed-Chr5:8360224 1.30E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37424 PF04690 YABBY 3.50E-71 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4021 K25796 - csv:101214748 392.119