Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4022 ATGCGTGGCTTGCTTTTGCCTTCTACTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCACAACATTCTGGATCAAAACATTCCAACTCCGAATTCCAATTATCTCATGAACCAGTTTGCAGCTAATAATTTTGGAATGCCTTCTCGAGGACTCACTGATGAGCTCCCTAGGCCGCCAGTCATCAACAGACCTCCAGAGAAGAGACAGAGAGTGCCTTCTGCTTATAACCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACCGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACATATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATCAGAATGTTGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 480 45.83 MRGLLLPSTNQFHQLGHSFFSPSHNILDQNIPTPNSNYLMNQFAANNFGMPSRGLTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVVLMKDNGFYASANVGVSHF 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69254375 69257596 + Sed0005272.2 Sed01g4022 703326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4022 159 FunFam Axial regulator YABBY 65 136 - -
Sed01g4022 159 CDD HMG-box_SF 74 110 - -
Sed01g4022 159 PANTHER PROTEIN YABBY 6-RELATED 51 129 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Sed01g4022 159 Pfam YABBY protein 54 120 IPR006780 GO:0007275(InterPro)
Sed01g4022 159 SUPERFAMILY HMG-box 64 113 IPR036910 -
Sed01g4022 159 Gene3D High mobility group box domain 65 135 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4022 Sed-Chr1:69254375 Sed05g0986 Sed-Chr5:8360224 1.10E-74 dispersed
Sed01g4021 Sed-Chr1:69254375 Sed01g4022 Sed-Chr1:69254375 5.90E-90 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37425 PF04690 YABBY 1.30E-39 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4022 K25796 - csv:101214748 296.589