Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4034 ATGGGGCGTGGTCGCAAGGCAAAGAAGCAGAAAGGGGCAATCGAAACCGAGCACGAATCAACTACGGACGCGGCGACTGAATATGTGAACAAAGTAGAGGAGACCTTTAAAGGCGAAGGCCAGATTTCTAAGTACAACGAGTTCCTTCAACTTCTCGTCGATCTCAAACCCGATACCAATACCGATGCCATGCCTTATCACCATCTCACTGCAAGACTCAACGACTTGTTTCGATTACATCCGCACCTCATTGCCGGTTTCAATGTGTTCTTGCCTCAAGAGTATCACTTCGATCCCGACGTTGCTACTACTTCGGGAAGAACCGATGATGACTCTGAGCATTTTAGGTGA 351 48.15 MGRGRKAKKQKGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPDTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFDPDVATTSGRTDDDSEHFR 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69380063 69380413 - Sed0005847.1 Sed01g4034 703338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4034 116 Pfam Paired amphipathic helix repeat 44 91 IPR003822 GO:0006355(InterPro)
Sed01g4034 116 SUPERFAMILY PAH2 domain 18 93 IPR036600 GO:0006355(InterPro)
Sed01g4034 116 PANTHER SIN3B-RELATED 20 100 IPR039774 GO:0000118(PANTHER)|GO:0000122(PANTHER)|GO:0000785(PANTHER)|GO:0003714(InterPro)|GO:0003714(PANTHER)
Sed01g4034 116 ProSiteProfiles PAH domain profile. 18 94 IPR003822 GO:0006355(InterPro)
Sed01g4034 116 Gene3D Paired amphipathic helix 17 95 IPR036600 GO:0006355(InterPro)
Sed01g4034 116 MobiDBLite consensus disorder prediction 1 22 - -
Sed01g4034 116 MobiDBLite consensus disorder prediction 8 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4034 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37426 PF02671 PAH 1.40E-05 No_clan Sed TR