Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4040 ATGCGTTTGTTTCCACTGAGATCTAGCCTGGATATGACCGAGAACAAGGAGCAGGGCAGCAGTAATGCTGTGTTATATCTTAATGTCTACGATCTTACTCCTATAAATAACTATCTCTATTGGGTTGGGCTCGGAATCTTTCATTCCGGTATTGAGGTTCATGGTATGGAGTATGGCTTTGGAGCACATGAATATCCTTCCAGTGGGATATTTGAGGTAGAGCCAAAAAGTTGTCCCGGATTTATCTTCCGAAGATCAGTGTTATTAGGAAGCACTGAATTGTCTCGGGCAGAATTTCGATCATTCATTGAGCACGTTTCTTCGGAGTACCATGGTGACACATATAATTTGATTGCCAAAAATTGCAACCACTTTACACAAGAAGTCAGCATGCGACTAACTGGGAAGCCCATTCCTGGATGGGTGAATCGGCTTGCCAGATTTGGTTCATGCTGCAATTGTCTTCTTCCAGAAAGCATTCAAATTACAGCAATTAGACACCTTCCTGATCATCCAACTTATTCTGATGACAGTGATGGGTCAGAATCTCTTGCATCTTCTTCATCAGGAAAAAGCCAAGAGGAGGAATCAGATCATCATTTACTGATGGCTCCCAATGGTGATGTAGCATTTCTAAAAGATAAACCAGTGAAGGTAACTAGAGAACCTGTTTAA 675 41.78 MRLFPLRSSLDMTENKEQGSSNAVLYLNVYDLTPINNYLYWVGLGIFHSGIEVHGMEYGFGAHEYPSSGIFEVEPKSCPGFIFRRSVLLGSTELSRAEFRSFIEHVSSEYHGDTYNLIAKNCNHFTQEVSMRLTGKPIPGWVNRLARFGSCCNCLLPESIQITAIRHLPDHPTYSDDSDGSESLASSSSGKSQEEESDHHLLMAPNGDVAFLKDKPVKVTREPV 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69411667 69416451 - Sed0003589.3 Sed01g4040 703344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4040 224 ProSiteProfiles PPPDE domain profile. 23 160 IPR008580 GO:0008233(InterPro)
Sed01g4040 224 Gene3D PPPDE domains 19 169 IPR042266 -
Sed01g4040 224 SMART DUF862_2a 23 161 IPR008580 GO:0008233(InterPro)
Sed01g4040 224 PANTHER DESUMOYLATING ISOPEPTIDASE 24 192 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
Sed01g4040 224 MobiDBLite consensus disorder prediction 171 224 - -
Sed01g4040 224 Pfam PPPDE putative peptidase domain 25 158 IPR008580 GO:0008233(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4040 K22763 - - csv:101221809 382.874
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4038 Sed-Chr1:69411667 Sed01g4040 Sed-Chr1:69411667 3.70E-124 dispersed
Sed01g4040 Sed-Chr1:69411667 Sed05g1004 Sed-Chr5:8664596 8.30E-100 dispersed
Sed01g4039 Sed-Chr1:69411667 Sed01g4040 Sed-Chr1:69411667 3.70E-124 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g557 . . . Bda08g01294 . Bpe12g00075 . . . Cmo11g01316 Cma02g00424 . Car02g00280 . Sed01g4040 Cpe04g00245 . Bhi05g01197 Tan02g1941 Cmetu09g0736 . . . . Cla02g00545 Cam02g0568 Cec02g0571 Cco02g0582 Clacu02g0569 Cmu02g0565 Cre02g0896 Cone12ag1137 Cone8ag1184 . . Lsi10g00336 . Chy11g00415 Cme01g01471 . . Bda15g00851 Bda14g00540 Bpe15g00876 . Bma03g00542 . . Cmo02g00425 . . . Car11g01060 . . Cpe05g01237 . . . . . . . Cla09g01744 Cam09g1835 Cec09g1896 Cco09g1988 . . Cre01g0675 Lsi11g01070 Csa02g01223 Chy01g00822 Cme11g00474
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005842 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 0 39