Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g4041 | ATGTATCAGATCACTAAAACAGAGTCGGATTTAGCTTTTCTCGAGCAAATTCGCCGCCACTTATTAGACGAATCAGAGACCACTGCCGCCGTCGCCGCCGCCGTTCCCGGCGACAGACCCACTAATTTCAGCCGCTTGATTCCATGTCTCGACGACAATTGGGGCGACTTGCCACTAAAATTTAACGACTCTGAAGACATGCTGCTCGCCGCCGTTCTCCGGGAAGCCGCCGGATGGGCGCCGTCGCAAAATCCGCCGTCACTTGGAAGTTTCAATTTTGGGTTCCCGGAAGTGAAGTCGGAGCCGGAGGTGCTTCCGGTGAGTTTTCCGGCAATGGCGGCGCCGCAGAAGGGGAAGCATTTTAGAGGAGTCCGGCAACGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGGGACCCGGCTAAAAACGGCGCCAGGGTTTGGCTAGGGACTTACGAGAAGGCTGAGGATGCAGCTCTGGCTTATGATCGAGCCGCTTACCGAATGCGCGGCTCGAGGGCTCTGCTCAATTTCCCGCTTCGGGTCAACTCGGGTGAGCCCGAACCGGTTCGAGTCACGTCGAAGCGGCCCTCGTCGGAGATTTCACCTTCGTCGAAGCGGCGGAGGAAAGTCAGCTCCGCCGTGGAAGGCGGGGGAGTACAGGTGGAGCAACAAGTGGCAAGCTTTACACATGAAGGGCAACTATTTGTCAACCAATGCTAA | 720 | 57.5 | MYQITKTESDLAFLEQIRRHLLDESETTAAVAAAVPGDRPTNFSRLIPCLDDNWGDLPLKFNDSEDMLLAAVLREAAGWAPSQNPPSLGSFNFGFPEVKSEPEVLPVSFPAMAAPQKGKHFRGVRQRPWGKFAAEIRDPAKNGARVWLGTYEKAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRPSSEISPSSKRRRKVSSAVEGGGVQVEQQVASFTHEGQLFVNQC | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 69432874 | 69433780 | + | Sed0010366.1 | Sed01g4041 | 703345 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g4041 | 239 | ProSiteProfiles | AP2/ERF domain profile. | 120 | 178 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g4041 | 239 | Pfam | AP2 domain | 120 | 171 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g4041 | 239 | SUPERFAMILY | DNA-binding domain | 120 | 180 | IPR016177 | GO:0003677(InterPro) | |
Sed01g4041 | 239 | PRINTS | Ethylene responsive element binding protein signature | 160 | 180 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g4041 | 239 | PRINTS | Ethylene responsive element binding protein signature | 121 | 132 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g4041 | 239 | Gene3D | AP2/ERF domain | 119 | 181 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g4041 | 239 | CDD | AP2 | 119 | 178 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g4041 | 239 | PANTHER | DNA-BINDING DOMAIN | 101 | 203 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Sed01g4041 | 239 | SMART | rav1_2 | 120 | 184 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g4041 | 239 | MobiDBLite | consensus disorder prediction | 185 | 216 | - | - | |
Sed01g4041 | 239 | FunFam | Ethylene-responsive transcription factor 2 | 119 | 179 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g4041 | Sed-Chr1:69432874 | Sed04g1680 | Sed-Chr4:31475757 | 1.40E-60 | dispersed | |
Sed01g4041 | Sed-Chr1:69432874 | Sed05g1007 | Sed-Chr5:8711649 | 1.10E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37427 | PF00847 | AP2 | 1.20E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g4041 | K09286 | - | csv:101221583 | 318.931 |