Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4041 ATGTATCAGATCACTAAAACAGAGTCGGATTTAGCTTTTCTCGAGCAAATTCGCCGCCACTTATTAGACGAATCAGAGACCACTGCCGCCGTCGCCGCCGCCGTTCCCGGCGACAGACCCACTAATTTCAGCCGCTTGATTCCATGTCTCGACGACAATTGGGGCGACTTGCCACTAAAATTTAACGACTCTGAAGACATGCTGCTCGCCGCCGTTCTCCGGGAAGCCGCCGGATGGGCGCCGTCGCAAAATCCGCCGTCACTTGGAAGTTTCAATTTTGGGTTCCCGGAAGTGAAGTCGGAGCCGGAGGTGCTTCCGGTGAGTTTTCCGGCAATGGCGGCGCCGCAGAAGGGGAAGCATTTTAGAGGAGTCCGGCAACGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGGGACCCGGCTAAAAACGGCGCCAGGGTTTGGCTAGGGACTTACGAGAAGGCTGAGGATGCAGCTCTGGCTTATGATCGAGCCGCTTACCGAATGCGCGGCTCGAGGGCTCTGCTCAATTTCCCGCTTCGGGTCAACTCGGGTGAGCCCGAACCGGTTCGAGTCACGTCGAAGCGGCCCTCGTCGGAGATTTCACCTTCGTCGAAGCGGCGGAGGAAAGTCAGCTCCGCCGTGGAAGGCGGGGGAGTACAGGTGGAGCAACAAGTGGCAAGCTTTACACATGAAGGGCAACTATTTGTCAACCAATGCTAA 720 57.5 MYQITKTESDLAFLEQIRRHLLDESETTAAVAAAVPGDRPTNFSRLIPCLDDNWGDLPLKFNDSEDMLLAAVLREAAGWAPSQNPPSLGSFNFGFPEVKSEPEVLPVSFPAMAAPQKGKHFRGVRQRPWGKFAAEIRDPAKNGARVWLGTYEKAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRPSSEISPSSKRRRKVSSAVEGGGVQVEQQVASFTHEGQLFVNQC 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69432874 69433780 + Sed0010366.1 Sed01g4041 703345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4041 239 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4041 239 Pfam AP2 domain 120 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4041 239 SUPERFAMILY DNA-binding domain 120 180 IPR016177 GO:0003677(InterPro)
Sed01g4041 239 PRINTS Ethylene responsive element binding protein signature 160 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4041 239 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4041 239 Gene3D AP2/ERF domain 119 181 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4041 239 CDD AP2 119 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4041 239 PANTHER DNA-BINDING DOMAIN 101 203 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed01g4041 239 SMART rav1_2 120 184 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4041 239 MobiDBLite consensus disorder prediction 185 216 - -
Sed01g4041 239 FunFam Ethylene-responsive transcription factor 2 119 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4041 Sed-Chr1:69432874 Sed04g1680 Sed-Chr4:31475757 1.40E-60 dispersed
Sed01g4041 Sed-Chr1:69432874 Sed05g1007 Sed-Chr5:8711649 1.10E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37427 PF00847 AP2 1.20E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4041 K09286 - csv:101221583 318.931