Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4052 ATGGGAAAGCATGGCCCCTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGCAATGGGCCTCCCGACAAACCAGTATTATGCAATGCATGTGGATCTCGATGGAGGACAAAAGGAACACTTACAAACTATACCCCTTTGCATGCTCGAGCTGATCCCGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAGCATTTCACTAAATAAACACAAAGAAGTGAAACAGCTAAAAAGAAAGCTGCAACCAGCAGATGGATCAATTCGGTGGATTCCTGATCAAAGCCAGGGTTACTATGGAGTAATGGATGAAGACACAAGCAATAGATCCAGTTCCGGGTCGGCCATATCTAATCCTGAGAGCTGTGCCCATTTCAGCAGTGTGGATGCTAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAAGAAGAGGACATGCGTGAATCGTCCAAAGCAATCCTCAGTTGAAAAACTAACTAAAGATCTATATAGTATTTTACGCGAGCAGAGATCTTCCTATTTCTCTGAAGCTTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCCGTTGAGATAGGTCATGGTAGCATTCTCATTAGGCATCCAAGCTCAATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCGGTTTCAGTTGATAATAAGCAATACTTGATAAATGATGTGTATTCCCCCCACCCTGCAACTGTTCTTGTATGTAGTGAAATCAAGGGTATGAATTTTCCAACATCTAGGATTGGAAAGATGAAGAAACCTTTTGGATCAGGAGTACAAGAAGTACAAATTAAAAGGGACTACTCTCATCATGAAAGTTTACAAATTCTAGGAAGCCATAACTCGCCCTTATGTGATGTAGATATGAACGACATTATAAACTTTGGAGAGTTCGCGAAACAACTAACAAATGAAGAGCAAGAGCAATTAAGGAAGTATCTACCACAGGTTGATATTGCCGAACTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTCTTTCAAGGAGAATATAACATCCTTCCAGCAACTGCTCGGGGAGGGTGTTTTCGATGTCTCCTTCCTTGGGACAATGATCGAAGACTGCAAGACTCTGAAAAGGCTTGTACTGTGTAACTCGTCAAAATCCAAATGGGTCGAACGCTATCAGCAACTGAAGAAAAGTAAAAATGGTTTCAGAGGATCTTTTCTTTCCAATGCCGACGCTTCGGTGTCGAGTAACTTCACGAATGTGAAGCGATTGCGTGAGAGCTACAATCAAAATGCTCCAGAGGTCAAGACTATCAAGAGCCCCAAGGTAATGAAGGAAAATAAGGATCCTGGAGAGGATGATGGGTCTTGCTTCAGTCCTAGAAGTTTATTTGCCTTGCCTTCTGATGGTAGCTCCCTCATGCTTGGATCCTTACAATTAATCGGAGAAAGTTCGGATCAAGATCTATTGCTTGATGTGCGGTCAAATAGTTCGTTCCCACAGGCCGAGCTCCTTCACCCGACTTCTCATTCGGGTGGTAGGCAGGCAAGCACATGTAGTAGCTCAGTTCACCCAAATATTGTTCATCACTAA 1614 43.87 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARADPDEYEDHRVSRVKSISLNKHKEVKQLKRKLQPADGSIRWIPDQSQGYYGVMDEDTSNRSSSGSAISNPESCAHFSSVDASDLTGPAQSIVWESMVPSKKRTCVNRPKQSSVEKLTKDLYSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLINDVYSPHPATVLVCSEIKGMNFPTSRIGKMKKPFGSGVQEVQIKRDYSHHESLQILGSHNSPLCDVDMNDIINFGEFAKQLTNEEQEQLRKYLPQVDIAELPETLKSMFDSPSFKENITSFQQLLGEGVFDVSFLGTMIEDCKTLKRLVLCNSSKSKWVERYQQLKKSKNGFRGSFLSNADASVSSNFTNVKRLRESYNQNAPEVKTIKSPKVMKENKDPGEDDGSCFSPRSLFALPSDGSSLMLGSLQLIGESSDQDLLLDVRSNSSFPQAELLHPTSHSGGRQASTCSSSVHPNIVHH 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69496899 69504014 + Sed0026046.1 Sed01g4052 703356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4052 537 Gene3D - 4 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed01g4052 537 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g4052 537 PANTHER OSJNBB0038F03.10 PROTEIN 1 371 IPR044589 -
Sed01g4052 537 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g4052 537 Gene3D - 292 381 IPR038108 -
Sed01g4052 537 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g4052 537 MobiDBLite consensus disorder prediction 510 537 - -
Sed01g4052 537 Pfam Asx homology domain 289 368 IPR028020 -
Sed01g4052 537 ProSitePatterns EF-hand calcium-binding domain. 302 314 IPR018247 -
Sed01g4052 537 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 408 IPR044867 -
Sed01g4052 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Sed01g4052 537 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4052 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4052 Sed-Chr1:69496899 Sed04g1664 Sed-Chr4:31353844 1.50E-179 dispersed
Sed04g0458 Sed-Chr4:3392008 Sed01g4052 Sed-Chr1:69496899 1.10E-137 transposed
Sed04g1651 Sed-Chr4:31200835 Sed01g4052 Sed-Chr1:69496899 9.70E-109 transposed
Sed01g4052 Sed-Chr1:69496899 Sed05g1020 Sed-Chr5:8881636 8.90E-108 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1471 . 71 348 C2C2-Gata Transcription Factor Family AT5G25830 53.9 1.2e-67 254.6
Sed12g0790 . 3 149 C2C2-Gata Transcription Factor Family AT3G06740 58.4 6.7e-37 151.4
Sed06g2170 . 96 263 C2C2-Gata Transcription Factor Family AT2G45050 51.3 2.2e-43 173.7
Sed07g1682 . 103 275 C2C2-Gata Transcription Factor Family AT4G36240 50.3 3.0e-39 159.8
Sed04g1664 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.8 2.3e-137 486.9
Sed01g4052 . 1 513 C2C2-Gata Transcription Factor Family AT4G17570 52.0 1.4e-129 461.1
Sed05g1020 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1021 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1020 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
Sed05g1021 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37428 PF13919 ASXH 4.80E-08 No_clan Sed TF