Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4052 ATGGGAAAGCATGGCCCCTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGCAATGGGCCTCCCGACAAACCAGTATTATGCAATGCATGTGGATCTCGATGGAGGACAAAAGGAACACTTACAAACTATACCCCTTTGCATGCTCGAGCTGATCCCGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAGCATTTCACTAAATAAACACAAAGAAGTGAAACAGCTAAAAAGAAAGCTGCAACCAGCAGATGGATCAATTCGGTGGATTCCTGATCAAAGCCAGGGTTACTATGGAGTAATGGATGAAGACACAAGCAATAGATCCAGTTCCGGGTCGGCCATATCTAATCCTGAGAGCTGTGCCCATTTCAGCAGTGTGGATGCTAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAAGAAGAGGACATGCGTGAATCGTCCAAAGCAATCCTCAGTTGAAAAACTAACTAAAGATCTATATAGTATTTTACGCGAGCAGAGATCTTCCTATTTCTCTGAAGCTTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCCGTTGAGATAGGTCATGGTAGCATTCTCATTAGGCATCCAAGCTCAATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCGGTTTCAGTTGATAATAAGCAATACTTGATAAATGATGTGTATTCCCCCCACCCTGCAACTGTTCTTGTATGTAGTGAAATCAAGGGTATGAATTTTCCAACATCTAGGATTGGAAAGATGAAGAAACCTTTTGGATCAGGAGTACAAGAAGTACAAATTAAAAGGGACTACTCTCATCATGAAAGTTTACAAATTCTAGGAAGCCATAACTCGCCCTTATGTGATGTAGATATGAACGACATTATAAACTTTGGAGAGTTCGCGAAACAACTAACAAATGAAGAGCAAGAGCAATTAAGGAAGTATCTACCACAGGTTGATATTGCCGAACTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTCTTTCAAGGAGAATATAACATCCTTCCAGCAACTGCTCGGGGAGGGTGTTTTCGATGTCTCCTTCCTTGGGACAATGATCGAAGACTGCAAGACTCTGAAAAGGCTTGTACTGTGTAACTCGTCAAAATCCAAATGGGTCGAACGCTATCAGCAACTGAAGAAAAGTAAAAATGGTTTCAGAGGATCTTTTCTTTCCAATGCCGACGCTTCGGTGTCGAGTAACTTCACGAATGTGAAGCGATTGCGTGAGAGCTACAATCAAAATGCTCCAGAGGTCAAGACTATCAAGAGCCCCAAGGTAATGAAGGAAAATAAGGATCCTGGAGAGGATGATGGGTCTTGCTTCAGTCCTAGAAGTTTATTTGCCTTGCCTTCTGATGGTAGCTCCCTCATGCTTGGATCCTTACAATTAATCGGAGAAAGTTCGGATCAAGATCTATTGCTTGATGTGCGGTCAAATAGTTCGTTCCCACAGGCCGAGCTCCTTCACCCGACTTCTCATTCGGGTGGTAGGCAGGCAAGCACATGTAGTAGCTCAGTTCACCCAAATATTGTTCATCACTAA 1614 43.87 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARADPDEYEDHRVSRVKSISLNKHKEVKQLKRKLQPADGSIRWIPDQSQGYYGVMDEDTSNRSSSGSAISNPESCAHFSSVDASDLTGPAQSIVWESMVPSKKRTCVNRPKQSSVEKLTKDLYSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLINDVYSPHPATVLVCSEIKGMNFPTSRIGKMKKPFGSGVQEVQIKRDYSHHESLQILGSHNSPLCDVDMNDIINFGEFAKQLTNEEQEQLRKYLPQVDIAELPETLKSMFDSPSFKENITSFQQLLGEGVFDVSFLGTMIEDCKTLKRLVLCNSSKSKWVERYQQLKKSKNGFRGSFLSNADASVSSNFTNVKRLRESYNQNAPEVKTIKSPKVMKENKDPGEDDGSCFSPRSLFALPSDGSSLMLGSLQLIGESSDQDLLLDVRSNSSFPQAELLHPTSHSGGRQASTCSSSVHPNIVHH 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69496899 69504014 + Sed0026046.1 Sed01g4052 703356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4052 537 Gene3D - 4 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed01g4052 537 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g4052 537 PANTHER OSJNBB0038F03.10 PROTEIN 1 371 IPR044589 -
Sed01g4052 537 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g4052 537 Gene3D - 292 381 IPR038108 -
Sed01g4052 537 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g4052 537 MobiDBLite consensus disorder prediction 510 537 - -
Sed01g4052 537 Pfam Asx homology domain 289 368 IPR028020 -
Sed01g4052 537 ProSitePatterns EF-hand calcium-binding domain. 302 314 IPR018247 -
Sed01g4052 537 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 408 IPR044867 -
Sed01g4052 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Sed01g4052 537 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4052 Sed-Chr1:69496899 Sed04g1664 Sed-Chr4:31353844 1.50E-179 dispersed
Sed04g0458 Sed-Chr4:3392008 Sed01g4052 Sed-Chr1:69496899 1.10E-137 transposed
Sed04g1651 Sed-Chr4:31200835 Sed01g4052 Sed-Chr1:69496899 9.70E-109 transposed
Sed01g4052 Sed-Chr1:69496899 Sed05g1020 Sed-Chr5:8881636 8.90E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37428 PF13919 ASXH 4.80E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4052 - - - 0.0