Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4053 ATGGAACTAATCTCATTGAAATGTGGCTTTCTTGGTTGCCTTTTGGTTGTGCTTTGGCCTATGTTGTGCACCTCACAAGATTATTTTGTCCCCTCTAGAGCCACTTATTATGGCAGCCCTGATTGCTATGGAACCCCATCTGGGGCTTGTGGATTTGGTGAATTTGGAAGGACTGTCAATGATGGCAATGTGGCTGCAGTTTCCTATCTCTATAGGAATGGTTCTGGTTGTGGTGCATGTTACCAGGTTAGGTGCACAAATCCAAAATATTGTAGTGATAGTGGAGCCTATGTAGTGGTGACTGACCATGGTGAAGGGGATTACACTGACTTTATCATGAGCCCAAGAGCCTATGCAAATTTGGCTTATCCAAACACAGCCTTGGAATTGTTCTCTTATGGTGTGGTTGATGTTGAATTCAGAAGGGTTTCTTGCCTATACCCTAATTACAACACTATCAAATTTAAGGTTCATGAGCATAGTAAGTTTCCCGACTACTTAGCCATCGTCGTCATCTATGTCGCGGGTAAAAATGACATCACCGCCGTTGAACTCTGGCAGGAGGATTGCAAGGAATGGAAGGGGATGAGGAGAGCTCATGGGGCTGTTTGGGACATGGCAAGCCCACCAAAAGGAGACATGAAATTGAGGTTTCAAGTGAGTGGAAGTGTGGGATATGGAAGATGGGTGGTGGCATCCAATGCCCTCCCAAGTTATTGGAGGGCAGGGGTTTCTTATGACACTGACATTCACCTCTATTAA 762 45.14 MELISLKCGFLGCLLVVLWPMLCTSQDYFVPSRATYYGSPDCYGTPSGACGFGEFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPKYCSDSGAYVVVTDHGEGDYTDFIMSPRAYANLAYPNTALELFSYGVVDVEFRRVSCLYPNYNTIKFKVHEHSKFPDYLAIVVIYVAGKNDITAVELWQEDCKEWKGMRRAHGAVWDMASPPKGDMKLRFQVSGSVGYGRWVVASNALPSYWRAGVSYDTDIHLY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69514725 69517460 - Sed0015448.1 Sed01g4053 703357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4053 253 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Sed01g4053 253 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576(InterPro)
Sed01g4053 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Sed01g4053 253 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Sed01g4053 253 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576(InterPro)
Sed01g4053 253 Pfam Lytic transglycolase 67 139 IPR009009 -
Sed01g4053 253 Gene3D - 148 253 IPR036749 -
Sed01g4053 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 150 IPR007112 -
Sed01g4053 253 CDD DPBB_EXLB_N 30 145 - -
Sed01g4053 253 Gene3D - 21 145 IPR036908 -
Sed01g4053 253 PANTHER EXPANSIN-B3 14 251 - -
Sed01g4053 253 SUPERFAMILY PHL pollen allergen 152 247 IPR036749 -
Sed01g4053 253 SMART dpbb_1 64 140 IPR007112 -
Sed01g4053 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Sed01g4053 253 SUPERFAMILY Barwin-like endoglucanases 15 148 IPR036908 -
Sed01g4053 253 Pfam Expansin C-terminal domain 153 237 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4053 Sed-Chr1:69514725 Sed01g4079 Sed-Chr1:69699887 1.60E-54 dispersed
Sed01g4053 Sed-Chr1:69514725 Sed05g0328 Sed-Chr5:2001388 4.90E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4053 - - - 0.0