Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4060 ATGCACCGCGCCCGAGGTCCGCTCGCCGCCGGCGCTGCCACTCTGGAGGTCGCCTCCGTCGAGCGGAAGCATGTCCACGAGGCCATCATCGACAAGCAGCTCGACCGATCCTCCCCCTCCTCTTCTCGCAAGGAAAACCCCTCCCCGATCATCCCGAATCCTCCGTCTGATCACAAAGACTCCGTTGCAGAGGAGTCTGAGACTGAAACTGAAGAGTCAGATGTCAGTGGATCTGATGGTGATGATACATCATGGATTTCATGGTTTTGTAATCTGCGAGGAAACGAGTTTTTTTGTGAAGTGGATGACGACTATATACAAGATGACTTTAACCTTTGTGGGTTAAGCAGTCAAGTTCCTTACTATGATTATGCCCTTGATTTGATTCTGGATGTTGAATCCTCTAATGGTGATATGTTTACAGAGGAACAGAATGAACTAGTTGAATCTGCAGCTGAAATGCTTTACGGTCTAATTCATGCAAGATACATATTGACTAGCAAAGGCATGGCTGCTATGTTGGACAAGTTCAAGAATTACGATTTCGGTAGATGCCCTAGAGTTTTCTGCTCTGGACAATCCTGCCTTCCACTTGGTGAATCAGACGTTCCTAGAGTAAACATTGTCAAGATATACTGTCCAAAGTGTGATGATGTTTATTATCCTCGGTCCAAGTATCAAGACATTGATGGAGCTTACTTTGGAACTACATTTCCTCATCTATTCCTGATGACATATGCACACCTTAAGCCGCAAAAAGGTAATCAAGGCTACGTTCCGAGAGTGTTCGGGTTCAAGGTCCACAAGCCGTGA 813 46.25 MHRARGPLAAGAATLEVASVERKHVHEAIIDKQLDRSSPSSSRKENPSPIIPNPPSDHKDSVAEESETETEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSNGDMFTEEQNELVESAAEMLYGLIHARYILTSKGMAAMLDKFKNYDFGRCPRVFCSGQSCLPLGESDVPRVNIVKIYCPKCDDVYYPRSKYQDIDGAYFGTTFPHLFLMTYAHLKPQKGNQGYVPRVFGFKVHKP 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69559720 69565005 + Sed0005760.2 Sed01g4060 703364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4060 270 FunFam Casein kinase II subunit beta 77 181 - -
Sed01g4060 270 Gene3D - 182 254 - -
Sed01g4060 270 SMART CK_II_beta_2 84 266 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 PRINTS Casein kinase II regulatory subunit family signature 101 115 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 PRINTS Casein kinase II regulatory subunit family signature 181 202 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 PRINTS Casein kinase II regulatory subunit family signature 230 247 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 PRINTS Casein kinase II regulatory subunit family signature 156 177 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 PRINTS Casein kinase II regulatory subunit family signature 84 100 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 PRINTS Casein kinase II regulatory subunit family signature 203 224 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 FunFam Casein kinase II subunit beta 182 253 - -
Sed01g4060 270 Pfam Casein kinase II regulatory subunit 84 266 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 SUPERFAMILY Casein kinase II beta subunit 82 269 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 ProSitePatterns Casein kinase II regulatory subunit signature. 185 216 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 PANTHER CASEIN KINASE II SUBUNIT BETA 64 269 IPR000704 GO:0005737(PANTHER)|GO:0005956(PANTHER)|GO:0005956(InterPro)|GO:0019887(InterPro)|GO:0019887(PANTHER)
Sed01g4060 270 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 77 181 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Sed01g4060 270 MobiDBLite consensus disorder prediction 28 80 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4060 K03115 - - csv:101211694 422.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4060 Sed-Chr1:69559720 Sed05g0340 Sed-Chr5:2156322 2.50E-119 dispersed
Sed01g4059 Sed-Chr1:69559720 Sed01g4060 Sed-Chr1:69559720 3.30E-159 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g570 . . . . . . . . . . Cma02g01578 . Car02g01342 . . . Cpe05g00212 . . . . . . . . . . . . . . Cone8ag0436 Cone12ag0421 Cone6ag0629 Cone9ag0632 . . Chy04g00032 . . Blo19g00259 . . . . . . Sed01g4060 . Cmo19g00397 . . . . . . Bhi05g00570 Tan07g1906 Cmetu04g2898 . Hepe06g1721 . Lcy12g1882 Cla09g01203 Cam09g1270 Cec09g1284 Cco09g1318 . . Cre09g1230 . Csa03g04669 . Cme04g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000972 4 4 2 2 3 2 4 2 2 2 2 2 3 2 2 3 2 6 4 2 2 3 2 2 2 2 2 10 2 2 84