Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4061 ATGGTGGATTACGCTCTGCCTGTAGCGAAGCGGACGAGGCTGAGGCGAGCAATGGCGGAAGAGGAGCAGTTCGTGCAGAGGAAGAAGTGTCGGAGGAGGAAGAACCGGCCGGATTCCGGAAGCGACAATGTTCGAGGCCGAGCTTCGAGCGGAGTTGGCGGCGGCGGCGATGGAGGTAAGAAGATGATGGTTCATACTTCTTGTAGTGTTAATCGCGTAATGCAGGTCGGGAAAGTTGAATTCAAAGTCGAGAGTGAGGGTGAGAGTTTGGAGGAGATTGATGCGGTTGCGTTTGGTAGGGAAGGCGGCGATTCGGTGTCGAGTTCGCGGTTGAAGAATGTGGAAGGGTTTGGTTCGAAGGGGATTGAGGATAATGCGGTTGTGGTTGATGAGGAGGAGGGTTTGGATTCTGTGAATTCTAATGGTTCGATTTCGAAATCGGCTGCTGTTGTGAAGGATGAGGGTTTGGTTTGCCATGATGTGGAGAATGGAGATGGTAGTTGTGGATTGATATCATCTGGTAAAGGAAAGGGTGATTTAGGGGTATCTCCTAATAAAAGCATTGAGGAGAGTTATTGCTTGAATTCTAATGGTTGTGAGACTGGTGATTGCTCGTTCAGTACTGAGCCTGCTTGTTGTTCTGATGATGCTGTAGATGATTCCACCGAATCGAAAGCATCATCGAGTGAAGACGAGTACGAAAACTCGAGTGATGGGAATTATGAATCAGAAGAATTAGAGTCTAGTTTTGAGTCTCTTAGTTCAGAAAATGGGAAGAAGAGGAATAGAACTTATTGTGTAGAAGCCGGAAGTAGAAGGGAAAAAAGCAAAAAGGAAGAAATTATTGAAGGTGGACTAAAAAGGAAGAAAGCTTATGGATTGGAATTATTGATTGGTATTGACAAGGATGCACATAACTCCAGTTATGAAGATGAAAATGTTAAGATTGGTGGGGTTAATTGTGTTGCGAGAAGAACCCGTTCACGCTATGGTTCTAAGGTTAAAAAGAAAGATACTGATCTTGGAACTGCCAGTAAACCACTCTGTGTTGACGAAGACGGGTCAGATTTTCAGGACGAGAAAAAAGAATTAGATTCTTTGTCAAGGCATGACAGTAGAGATTCTAGTGATAGTAGTAGTGGCATTGGCAGTGATAGTTATAGTGATAGTGATTGTAATTCTGATGATGAAGTTTACAAGCCAAGGGCCTGGAGTTGTGGTAGTACAGAGAAAACTCAGTTCAACAATCAAAGTGATAATGATATCTTATCAGAAAAACAAGATGACGATACGAACAAGGCTGAGAATTTTCATGGGAGTAAACTTTGGTATAGTAAAAGTTTACCCGCAACAAATAAATGCCTTAAGACTGAAGATTGTGAAATGTTTCTGAAGGTTCACCCAAAGGGTAGTGAAGATTCTCCGAAGGTTCATCCAAAGAGTTGTGAAGATTTTCTAAATGTTCACATAAAGCGTTGCAAAGATTCTCAAAAGGTTCGCTCGACGAATTACCACAAAGGCCGTGCGTTGAAAAGACTTGATGTTTTCAATATTCTTGTAGATTCCATAATTGAAGACAAAGATTTGCCTTCGGATGAGTTAGATCCTCATACAAATCAAGTCCCCCATTTTTCTGAGATGCATCTTCCTTTGAAGTACAATTTTGAATTTGAGGAACCACCTCTTCGAGAGATTTCAGAGGAAGATAAAGAATTGGACAAACTGTGGGCAGAGCTAGACTTTACTCTCAGATCCGATGAGATTGGTGTCGTAGATTCCAATGCAGTTGAAAATGAATATCCATTTCCCTCAAAGCTCGAGCAAGTGGATCTGTGTCTTCGTGGTGATCATCAGCTCATACTTGATGAACAAATTGGACTTAAATGCAGATGTTGTTCTTTTATCAAATTAGAAATCAAAGACATCATGCCTTCTTTTGATACAAATCCATCTGGAAAGTCAAAGAGGAAGGAATCTGGCTCATTTGAGCCTTTTAAATTTGATGACCTAAAACATGATTCTGATTGTGTCCCCAATGACGGCTCTGATTCACAATCTCATTTTGGACGTACAGTGTGGGATATCATTCCTGGTATTCGAGATGGTATGTACCCACATCAGCTCGAAGGCTTTGAATTTATTTGGAAAAATATAGCTGGAGGAATTTCTCTTGATGAGTTGAGGGAAAGAAGCAACTTAGACGATGGGAATGGATGCATTGTCTCACATGCTCCTGGAACAGGAAAAACTCGTCTAACAATTGTTTTTCTTCAAACATATATGGAACTAAATCCGACTTGCCGGCCAATGATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTAAAGTGGAAGGTTGGGGTTCCCTTTCATAACCTGAGTAAGCTAGATTTCACTCTTAAGGAGAATCGTTCAGCTCTTAACTTCTTGGCGAAAGCTTCCCCATCTAGAAAAAGTATGGACAAGGACAGTGTACGGCTTGTAAAACTGATTTCTTGGAAAAAGGAGAAAAGCATCTTAGGAGTTAGCTACAGATTGTTTGAAAGACTTGCAGGAGTTCGGAAGAATTCTAAATATGATGCAGTTAGGAGTGTCCTCTTGGAACTTCCTGGTCTTGTGGTCTTTGATGAAGGGCACATACCACGCAATGATGACAGTCTTATTTGGATGGCCTTATCTAAAATTAAAACCGAAAGGCGCATCATCCTTTCTGGAACTCCGTTCCAGAATAATTTTAATGAGTTTTCTAATACTCTAAGGTTGGCAAGGCCAAACTTTGCAGTTGTAAATGATTGTGGAGGCAATGAATGTCAAGATAAGAAGCGTGGACGCCCGAGGAATATCACAAGAGGAAAGTGGGACCATTTAATTAGTTCTGTTGATAGAACTCCTGGAAACTTACTGGAAACCCCTGAATTGAGAGAGATCAGAGCCTTGATCAATCCATTCGTGCATGTATACAGAGGCAGCATACTACAAGAGAAGCTTCCGGGGTTGAGGAAATCTGTAGTCATATTACAGCCATCAGAGCTGCAGAAGAGGTATCTTGAGAGCATAGTAGCGAAGATTTCGTTGGAAGTGGAATTTGCTGAAGCCTTGATCTCTGTACACCCTTCCCTAAAACTGAAGTGTGATAAAGCAGATGTTAATGTTGACAGGGAAATGTTAGAAAAGGTTAGATTGAATCCCGATCTAGGAGTGAAAATACAGCTTCTCCTTGAAATTATACGCCTGAGTAAAGCTTTGAATGAGAAAGTTTTGGTTTTCAGCCAATACATCGAACCGTTGAATTTTATCGAAGAGCATCTTAAGTTTCACTTTAATTGGATTGATGGAATAGAGTTGTTTCATATGGATGGAAAACGTGATATGAAGAAACGACAATCATTGATAAACACCTTCAACGATCCAACAAGTGAAGTTAAAGTATTGCTTGCATCAACAAGGGCTTGCTCTGAAGGTATAAACCTTATTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAACCCCTCTGTAGAAAGACAAGCCATATGCCGTGCATATAGACTTGGGCAGAAAAAGGTTGTTTATGTCTATCATCTCATTACCTCTGGGACAAGGGAAGAAGATAAGTACAGTCGGCAGATGAAAAAAGATCGGTTGTCTGAATTAGTTTTCTCTCCCGAACAAAGCAGTAATCAAGTAAAAGTATCATCCTCAGATCTGAATGACAGAATTTTGGAAGCAGTGCTTCAACATGAAAAGCTTAAAAATATATTCCAAAAGATAGCATACCAGTCAAAGGAGTCTAACATGAATGAGAACTTTGGCTTGGCAGATCAGGAGTGA 3846 41.0 MVDYALPVAKRTRLRRAMAEEEQFVQRKKCRRRKNRPDSGSDNVRGRASSGVGGGGDGGKKMMVHTSCSVNRVMQVGKVEFKVESEGESLEEIDAVAFGREGGDSVSSSRLKNVEGFGSKGIEDNAVVVDEEEGLDSVNSNGSISKSAAVVKDEGLVCHDVENGDGSCGLISSGKGKGDLGVSPNKSIEESYCLNSNGCETGDCSFSTEPACCSDDAVDDSTESKASSSEDEYENSSDGNYESEELESSFESLSSENGKKRNRTYCVEAGSRREKSKKEEIIEGGLKRKKAYGLELLIGIDKDAHNSSYEDENVKIGGVNCVARRTRSRYGSKVKKKDTDLGTASKPLCVDEDGSDFQDEKKELDSLSRHDSRDSSDSSSGIGSDSYSDSDCNSDDEVYKPRAWSCGSTEKTQFNNQSDNDILSEKQDDDTNKAENFHGSKLWYSKSLPATNKCLKTEDCEMFLKVHPKGSEDSPKVHPKSCEDFLNVHIKRCKDSQKVRSTNYHKGRALKRLDVFNILVDSIIEDKDLPSDELDPHTNQVPHFSEMHLPLKYNFEFEEPPLREISEEDKELDKLWAELDFTLRSDEIGVVDSNAVENEYPFPSKLEQVDLCLRGDHQLILDEQIGLKCRCCSFIKLEIKDIMPSFDTNPSGKSKRKESGSFEPFKFDDLKHDSDCVPNDGSDSQSHFGRTVWDIIPGIRDGMYPHQLEGFEFIWKNIAGGISLDELRERSNLDDGNGCIVSHAPGTGKTRLTIVFLQTYMELNPTCRPMIIAPSSMLLTWEEEFLKWKVGVPFHNLSKLDFTLKENRSALNFLAKASPSRKSMDKDSVRLVKLISWKKEKSILGVSYRLFERLAGVRKNSKYDAVRSVLLELPGLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFNEFSNTLRLARPNFAVVNDCGGNECQDKKRGRPRNITRGKWDHLISSVDRTPGNLLETPELREIRALINPFVHVYRGSILQEKLPGLRKSVVILQPSELQKRYLESIVAKISLEVEFAEALISVHPSLKLKCDKADVNVDREMLEKVRLNPDLGVKIQLLLEIIRLSKALNEKVLVFSQYIEPLNFIEEHLKFHFNWIDGIELFHMDGKRDMKKRQSLINTFNDPTSEVKVLLASTRACSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYVYHLITSGTREEDKYSRQMKKDRLSELVFSPEQSSNQVKVSSSDLNDRILEAVLQHEKLKNIFQKIAYQSKESNMNENFGLADQE 1281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69566470 69575951 - Sed0017522.1 Sed01g4061 703365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4061 1281 MobiDBLite consensus disorder prediction 327 394 - -
Sed01g4061 1281 MobiDBLite consensus disorder prediction 18 61 - -
Sed01g4061 1281 MobiDBLite consensus disorder prediction 410 432 - -
Sed01g4061 1281 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 730 929 IPR014001 -
Sed01g4061 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 693 931 IPR027417 -
Sed01g4061 1281 Gene3D - 680 948 IPR038718 -
Sed01g4061 1281 SMART ultradead3 699 933 IPR014001 -
Sed01g4061 1281 Gene3D - 1001 1280 IPR027417 -
Sed01g4061 1281 Pfam SNF2-related domain 706 1022 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Sed01g4061 1281 MobiDBLite consensus disorder prediction 217 258 - -
Sed01g4061 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 875 1229 IPR027417 -
Sed01g4061 1281 MobiDBLite consensus disorder prediction 218 232 - -
Sed01g4061 1281 CDD SF2_C_SNF 1068 1201 IPR049730 -
Sed01g4061 1281 MobiDBLite consensus disorder prediction 352 376 - -
Sed01g4061 1281 Pfam Helicase conserved C-terminal domain 1072 1190 IPR001650 -
Sed01g4061 1281 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 51 1268 IPR044567 GO:0080188(InterPro)
Sed01g4061 1281 SMART helicmild6 1101 1190 IPR001650 -
Sed01g4061 1281 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1074 1242 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4061 K10875 - - csv:105435045 1454.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4061 Sed-Chr1:69566470 Sed04g0365 Sed-Chr4:2652147 9.90E-97 dispersed
Sed01g4061 Sed-Chr1:69566470 Sed05g0337 Sed-Chr5:2149032 1.20E-262 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37429 PF00176 SNF2_N 3.10E-18 CL0023 Sed TR