Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g4099 | ATGGCTGGTTTGGATTTAGGCAATCGCTATATGCACCATCTCCAAACACCTGATTTCAACCTTCACTCTCGTCACGACGATGAACCCCGTCAAGCGTTGGAGTTCGTCTCCGCCAACCCCGCCACCGATACGGTTGCCTCTCAACGTCCCCGGGGCCGTCCACCGGGCTCCAAAAACAAACCTAAGCCCCCGGTGATCATAACTCGAGAAAGCGCCAATACCCTACGCGCTCATATTCTCGAGATCGGAAGCGGCTGCGACGTGTTCGATAGCATCGCGACCTACGCCCGCCGACGCCAGCGGGGGATCTGCATCTTGAGCGGCAGCGGGATGGTGACGAATGTCAACTTAAGGCAACCGGTAGCGGCAGGCGCTGTGTTAACCCTACAAGGTAGGTTTGAAATACTGTCCCTTAAGGGATCTTTCCTTCCGTCGCCCGCTCCGCCCGGCGCTACCAGTTTGACCGTATACTTGGCTGGCGGACAAGGCCAAGTAGTCGGTGGTAACGTCGTTGGAGAGCTGATGGCGGCAGGACCCGTGACAGTTATCGCTGCATCGTTTACTAACGTAGCGTACGAAAGACTACCACTCGAAGAACAACAAGAACAACCACCCATATCGCAAGGCGGCGGAGGCGGTAACAATACTCAATTTTCAGATCCATCTTCTGGGCTTCCTTTCTTGAATTTGCCTCTAAATATGCAGAATCAAATTCAGCTTCCATTCTGA | 729 | 54.05 | MAGLDLGNRYMHHLQTPDFNLHSRHDDEPRQALEFVSANPATDTVASQRPRGRPPGSKNKPKPPVIITRESANTLRAHILEIGSGCDVFDSIATYARRRQRGICILSGSGMVTNVNLRQPVAAGAVLTLQGRFEILSLKGSFLPSPAPPGATSLTVYLAGGQGQVVGGNVVGELMAAGPVTVIAASFTNVAYERLPLEEQQEQPPISQGGGGGNNTQFSDPSSGLPFLNLPLNMQNQIQLPF | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 69893436 | 69894543 | + | Sed0014192.1 | Sed01g4099 | 703403 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g4099 | 242 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 40 | 210 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed01g4099 | 242 | CDD | DUF296 | 76 | 159 | IPR005175 | - | |
Sed01g4099 | 242 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 72 | 201 | - | - | |
Sed01g4099 | 242 | MobiDBLite | consensus disorder prediction | 35 | 65 | - | - | |
Sed01g4099 | 242 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 76 | 188 | IPR005175 | - | |
Sed01g4099 | 242 | ProSiteProfiles | PPC domain profile profile. | 72 | 209 | IPR005175 | - | |
Sed01g4099 | 242 | MobiDBLite | consensus disorder prediction | 201 | 222 | - | - | |
Sed01g4099 | 242 | MobiDBLite | consensus disorder prediction | 200 | 222 | - | - | |
Sed01g4099 | 242 | Gene3D | - | 75 | 203 | - | - | |
Sed01g4099 | 242 | FunFam | AT-hook motif nuclear-localized protein | 75 | 202 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g4099 | Sed-Chr1:69893436 | Sed02g0122 | Sed-Chr2:26707387 | 1.10E-81 | dispersed | |
Sed01g4099 | Sed-Chr1:69893436 | Sed12g0290 | Sed-Chr12:1686312 | 6.30E-77 | wgd | |
Sed01g4099 | Sed-Chr1:69893436 | Sed04g0827 | Sed-Chr4:7002495 | 8.80E-79 | wgd | |
Sed01g4099 | Sed-Chr1:69893436 | Sed05g0289 | Sed-Chr5:1834335 | 2.50E-102 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g4099 | - | - | - | 0.0 |