Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4099 ATGGCTGGTTTGGATTTAGGCAATCGCTATATGCACCATCTCCAAACACCTGATTTCAACCTTCACTCTCGTCACGACGATGAACCCCGTCAAGCGTTGGAGTTCGTCTCCGCCAACCCCGCCACCGATACGGTTGCCTCTCAACGTCCCCGGGGCCGTCCACCGGGCTCCAAAAACAAACCTAAGCCCCCGGTGATCATAACTCGAGAAAGCGCCAATACCCTACGCGCTCATATTCTCGAGATCGGAAGCGGCTGCGACGTGTTCGATAGCATCGCGACCTACGCCCGCCGACGCCAGCGGGGGATCTGCATCTTGAGCGGCAGCGGGATGGTGACGAATGTCAACTTAAGGCAACCGGTAGCGGCAGGCGCTGTGTTAACCCTACAAGGTAGGTTTGAAATACTGTCCCTTAAGGGATCTTTCCTTCCGTCGCCCGCTCCGCCCGGCGCTACCAGTTTGACCGTATACTTGGCTGGCGGACAAGGCCAAGTAGTCGGTGGTAACGTCGTTGGAGAGCTGATGGCGGCAGGACCCGTGACAGTTATCGCTGCATCGTTTACTAACGTAGCGTACGAAAGACTACCACTCGAAGAACAACAAGAACAACCACCCATATCGCAAGGCGGCGGAGGCGGTAACAATACTCAATTTTCAGATCCATCTTCTGGGCTTCCTTTCTTGAATTTGCCTCTAAATATGCAGAATCAAATTCAGCTTCCATTCTGA 729 54.05 MAGLDLGNRYMHHLQTPDFNLHSRHDDEPRQALEFVSANPATDTVASQRPRGRPPGSKNKPKPPVIITRESANTLRAHILEIGSGCDVFDSIATYARRRQRGICILSGSGMVTNVNLRQPVAAGAVLTLQGRFEILSLKGSFLPSPAPPGATSLTVYLAGGQGQVVGGNVVGELMAAGPVTVIAASFTNVAYERLPLEEQQEQPPISQGGGGGNNTQFSDPSSGLPFLNLPLNMQNQIQLPF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69893436 69894543 + Sed0014192.1 Sed01g4099 703403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4099 242 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 210 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed01g4099 242 CDD DUF296 76 159 IPR005175 -
Sed01g4099 242 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 201 - -
Sed01g4099 242 MobiDBLite consensus disorder prediction 35 65 - -
Sed01g4099 242 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 188 IPR005175 -
Sed01g4099 242 ProSiteProfiles PPC domain profile profile. 72 209 IPR005175 -
Sed01g4099 242 MobiDBLite consensus disorder prediction 201 222 - -
Sed01g4099 242 MobiDBLite consensus disorder prediction 200 222 - -
Sed01g4099 242 Gene3D - 75 203 - -
Sed01g4099 242 FunFam AT-hook motif nuclear-localized protein 75 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4099 Sed-Chr1:69893436 Sed02g0122 Sed-Chr2:26707387 1.10E-81 dispersed
Sed01g4099 Sed-Chr1:69893436 Sed12g0290 Sed-Chr12:1686312 6.30E-77 wgd
Sed01g4099 Sed-Chr1:69893436 Sed04g0827 Sed-Chr4:7002495 8.80E-79 wgd
Sed01g4099 Sed-Chr1:69893436 Sed05g0289 Sed-Chr5:1834335 2.50E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4099 - - - 0.0