Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4108 ATGACGGACTACCGATTACCGCCGACGATGAATCTCTGGGCGGACGAGAACGCGTCGATGATGGACGCGTTCATGACCACCGATCTGAGTTCCTTCTGGGCTACCCCGCCGCCGCAGCAACTCCCTCACCCTCCGCCGTGTTCCTCTGTTTTCGCCGCCGCGCCGGATCCGACCAAATCTCTTCCGCAGCCGCAGTCGGTGCCGCCGTCCACGGCGGCGTTCAACCAGGAAACTCTCCAGCAGCGTCTCCAAGCCTTGATCGATGGCGCTGAGGAGAGCTGGAGTTACGCCATCTTCTGGCAGTCCTCATCGTACGATTACGCCGGCGCCGCCGTGTTGGGCTGGGGAGATGGGTATTACAAAGGCGAAGAAGATAAAGACAAGGAAAAGGCGAAATCGAGTTCTTCCAAAGAAGAGCAAGAGCATCGTAAGAAGGTACTTCGTGAGCTTAACTCTCTAATTTCTGGTTCCCCTGCTTCTGAAGATGACGCCGTTGACGAGGTCGTTACCGATTCTGAATGGTTCTTTTTGTTGTCCATGACTCAATCCTTTGTCTCCGGCGTTGGATTGCCGGGTCAGTCGTTTTTTTATTCTAAATCTATTTGGGTTGCCGGTTCCGACCGGTTGGCGAGCTCCTTCTGCGAACGAGCTCGCCATGGTCAGGTCATCGGGTTGCAGACTATGGTCTGTATTCCGTCTGCGAATGGGGTTGTCGAATTGGGTTCGAGTGAGTTGATTTACCAGAGTGTGGATCTGATGAATAAGGTTAGGGTTTTGTTCAACTTCAATAATCTGGATGTTGAAACTTGGGCAGTTAATGGTGTTGATCAAGGGGAGAATGACCCATCTTCTCTTTGGATTAGTGAACCTACAAATACTAATGAAAATAAGGACTATCTGATTGTGAGTAATAATAATAATCCTGTGGCTTCTGCTTCAACTCCTAGTACCACAATTACAACCCAGATTGAAACCCCCAAATCTAGTGTTGTTACTGAAGCTGCTACTTCTGTTCCTCTTTCGCAAAAGAGTAATCGAAACTCGCAGCCGGCTCATACCCAGAGCTTCTTTACCAGGGAATTGAACTTTTCTGAATTTGGGTATGATAATAGCAGCTTGAAGGATGGAAATTCGCATACTCTCAAGCCCGAATCCGGCGAGATTCTGAACTTTGGTGAGAGTAAGAGGAGTTCTTTTCCCATCACTGAGCCTTCTGGCAATTCCCAATTTGGAGCAGATGAGACTAAGAAGAAGAAATCTCCGACTTCGCGTGGGAGTAACGATGAAGGGATGCTTTCGTTTACTTCTGGTGTGATTCTTCCTTCCTCTGGTGTTGGGAAATCTGGTGGTGGCCTTGGCGATTCGGACCACTCCGACCTTGAAGCTTCGGTGATTCGTGAGGTGGAGAGTAGTAGAGCGGTGGAGCCTGAGAAACGGCCCCGCAAACGGGGGCGGAAGCCAGCGAATGGTAGAGAAGAACCATTGAATCATGTTGAAGCTGAGAGGCAGAGGAGAGAAAAGCTCAACCAAAAATTCTATGCTCTTAGAGCCGTGGTTCCTAATGTGTCAAAAATGGATAAAGCTTCACTTCTTGGTGATGCCATAGCTTACATCAATGAGCTTAGAGAGAAGCTTCAAACTGCAGAATCAGATAAGGAGGATTTGCTGAAGCAATTGGATTCAGTAAAGAAGTTGATGATGTCTAGTAAAGATTCATCCGCAACAAGCTCGAATCAAGCCCCACCAGATCAAGACATAAAAACATCTAACATCCATGGAAACAAGAGTAGTATCGAAACGGATATCGATGTGAAGATAATCGGTTGGGATGCTATGGTCCAAATCCAATCTAGCAAGAAAAGTCATCCTGCTGCCCGGCTGATGGCAGCTTTGGAGGAACTGGATTTGGATATCAACCACGCGAGCATTTCAGTTGTCAATGATTTGATGATCCAACAAGCAACCGTCAAGATGAGTCGATTATACACTCAGGAGCAGCTAAGGAAAGCGCTATCTTTGAAATTCGGTTCAACTCGGTAG 2040 47.94 MTDYRLPPTMNLWADENASMMDAFMTTDLSSFWATPPPQQLPHPPPCSSVFAAAPDPTKSLPQPQSVPPSTAAFNQETLQQRLQALIDGAEESWSYAIFWQSSSYDYAGAAVLGWGDGYYKGEEDKDKEKAKSSSSKEEQEHRKKVLRELNSLISGSPASEDDAVDEVVTDSEWFFLLSMTQSFVSGVGLPGQSFFYSKSIWVAGSDRLASSFCERARHGQVIGLQTMVCIPSANGVVELGSSELIYQSVDLMNKVRVLFNFNNLDVETWAVNGVDQGENDPSSLWISEPTNTNENKDYLIVSNNNNPVASASTPSTTITTQIETPKSSVVTEAATSVPLSQKSNRNSQPAHTQSFFTRELNFSEFGYDNSSLKDGNSHTLKPESGEILNFGESKRSSFPITEPSGNSQFGADETKKKKSPTSRGSNDEGMLSFTSGVILPSSGVGKSGGGLGDSDHSDLEASVIREVESSRAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAIAYINELREKLQTAESDKEDLLKQLDSVKKLMMSSKDSSATSSNQAPPDQDIKTSNIHGNKSSIETDIDVKIIGWDAMVQIQSSKKSHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMSRLYTQEQLRKALSLKFGSTR 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69950923 69953567 - Sed0018501.1 Sed01g4108 703412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4108 679 Gene3D - 484 572 IPR036638 GO:0046983(InterPro)
Sed01g4108 679 MobiDBLite consensus disorder prediction 567 594 - -
Sed01g4108 679 SMART finulus 498 547 IPR011598 GO:0046983(InterPro)
Sed01g4108 679 Pfam Helix-loop-helix DNA-binding domain 496 542 IPR011598 GO:0046983(InterPro)
Sed01g4108 679 MobiDBLite consensus disorder prediction 391 411 - -
Sed01g4108 679 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 495 564 IPR036638 GO:0046983(InterPro)
Sed01g4108 679 MobiDBLite consensus disorder prediction 425 442 - -
Sed01g4108 679 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 79 260 IPR025610 -
Sed01g4108 679 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 492 541 IPR011598 GO:0046983(InterPro)
Sed01g4108 679 MobiDBLite consensus disorder prediction 459 502 - -
Sed01g4108 679 Coils Coil 538 565 - -
Sed01g4108 679 FunFam Transcription factor bHLH13 485 559 - -
Sed01g4108 679 PANTHER MYC 71 673 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Sed01g4108 679 MobiDBLite consensus disorder prediction 123 142 - -
Sed01g4108 679 Pfam Plant bHLH transcription factor, ACT-like domain 602 670 IPR054502 -
Sed01g4108 679 CDD bHLH_AtAIB_like 489 564 - -
Sed01g4108 679 MobiDBLite consensus disorder prediction 390 502 - -
Sed01g4108 679 MobiDBLite consensus disorder prediction 326 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4108 Sed-Chr1:69950923 Sed02g1765 Sed-Chr2:52396130 5.00E-47 dispersed
Sed13g0085 Sed-Chr13:536482 Sed01g4108 Sed-Chr1:69950923 2.10E-06 dispersed
Sed01g4108 Sed-Chr1:69950923 Sed04g0836 Sed-Chr4:7092873 2.20E-188 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37435 PF14215 bHLH-MYC_N 3.80E-53 CL0161 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4108 K13422 - csv:101218165 906.36