Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4109 ATGGCGACCGATAGCAAGATCTGTTTCGATTGTTTTGCTAAGAACCCTACTTGGGCGTCCCTTCCGTTTGGGATCTTCCTTTGCATCGATTGCTCCGCCGTTCATCGGAGTCTTGGTGTTCATATAAGATTTTTCAGGGCAACGAATTTGGACTCATGGTCACTGGAGCAGCTGAAAATGATGAGCATTGGCGGAAACAACCCTAAATACACATCTAGAGCTGCAGAATTGTACAAACAAACCCTTTCCAAAGAGGTTGCTGAAGCCATTGCTGAAGAAATCACCCTTCCTTCCTCGCCTGTTACTTCTCCCTCCAATGCCAATGTCAAGGGAAATTCCCTTCCATTTCCAATTGGTACCAAAAAGACTGGAAAAACTGGTGGACTTGGTGCTAGAAAGCTTAAGACAAAGAATCTGTATGGTCAGAAACCGGAAGTCCCCGTGACACTGGTTTCGTCTTCGTCATCCAACAGTGTAGCGGTCTCATCGTTTGTTTCTTGGTTTGAGTATATGGAGAATGCACAATCTTCTGAGGAGAATTCTAATAATGAAGCAAGGAAGAAGTTCTTGAACGAAAAATCGTTCTCGTCTGCTCAATTCTTCGGCGACCAGAACAAATCTTCCGAGTCTGAGGCTAAAGGTTCGCTGAATAAGTTTTCGCAATTAAATTGTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATGTTATAATTTTGGGACTAAAAAAAAAGTAACAAATTTGAGATTTTCAATATTGTTGAATTTAAAATAA 777 39.77 MATDSKICFDCFAKNPTWASLPFGIFLCIDCSAVHRSLGVHIRFFRATNLDSWSLEQLKMMSIGGNNPKYTSRAAELYKQTLSKEVAEAIAEEITLPSSPVTSPSNANVKGNSLPFPIGTKKTGKTGGLGARKLKTKNLYGQKPEVPVTLVSSSSSNSVAVSSFVSWFEYMENAQSSEENSNNEARKKFLNEKSFSSAQFFGDQNKSSESEAKGSLNKFSQLNCSLKKKKKKKKLKCYNFGTKKKVTNLRFSILLNLK 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69974247 69977344 + Sed0015856.1 Sed01g4109 703413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4109 258 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 179 221 - GO:0048205(PANTHER)
Sed01g4109 258 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 67 IPR001164 GO:0005096(InterPro)
Sed01g4109 258 SMART arf_gap_3 2 91 IPR001164 GO:0005096(InterPro)
Sed01g4109 258 SUPERFAMILY ArfGap/RecO-like zinc finger 4 79 IPR037278 -
Sed01g4109 258 Pfam Putative GTPase activating protein for Arf 4 70 IPR001164 GO:0005096(InterPro)
Sed01g4109 258 PRINTS HIV Rev interacting protein signature 5 24 IPR001164 GO:0005096(InterPro)
Sed01g4109 258 PRINTS HIV Rev interacting protein signature 24 41 IPR001164 GO:0005096(InterPro)
Sed01g4109 258 PRINTS HIV Rev interacting protein signature 45 66 IPR001164 GO:0005096(InterPro)
Sed01g4109 258 MobiDBLite consensus disorder prediction 101 130 - -
Sed01g4109 258 CDD ArfGap_ArfGap2_3_like 4 88 - -
Sed01g4109 258 Gene3D Arf GTPase activating protein 2 102 IPR038508 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4109 K12493 - - csv:101217929 233.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4109 Sed-Chr1:69974247 Sed05g0298 Sed-Chr5:1880111 5.20E-53 dispersed
Sed01g4109 Sed-Chr1:69974247 Sed04g0837 Sed-Chr4:7146780 3.90E-53 wgd
Sed01g4109 Sed-Chr1:69974247 Sed05g0297 Sed-Chr5:1880111 1.40E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g672 Blo02g00992 . . Bda08g00628 Bpe05g00530 . . . Cmo06g00656 Cmo16g01209 . . . . Sed02g0115 Cpe14g00961 . Bhi11g00157 Tan01g2189 Cmetu06g2430 . . Mch10g1655 . Cla10g00158 Cam10g0158 Cec10g0168 Cco10g0167 Clacu10g0160 Cmu10g1009 Cre10g0419 Cone8ag0472 Cone12ag0466 . . Lsi07g01197 . Chy04g00094 Cme06g02472 . . . . . . Bma05g00713 . Sed01g4109 . Cmo19g00250 Cma06g00647 Cma16g01158 Car06g00578 Car16g01098 . Cpe15g00213 Bhi05g00496 Tan07g1980 . . . . . Cla09g01127 Cam09g1182 Cec09g1193 Cco09g1214 . . Cre09g1144 . Csa03g04608 Chy06g02144 Cme04g00118
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0067636 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1