Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4114 ATGGGGTCTTATGGCAGCCCTAAAACTTGGATACCATATATGGACAACAAAGATTGCTCTCAAGGTTTCTGTAGTGTCTATTGTCCTCAATGGTGCTACATCATGTTTTCACCTCCACCACCCTTAGAGTTTCAAGATGATGATTCAGGTCCTAATTTTTCACCTCTTGTGATTGCTATTGTTGGAATTCTGGCAAGTGCTTTTCTTCTTATAAGCTATTACACCATCATTTCAAAGTATTGTGGCCATACGAATCGACTGTCTAGGACTAGAGACCATGGCCCAGATGAGGAATTTGAAGATAATTACAACCCGACACTTCACGAGCCGTGGCATGTTGCCACTACTGGCTTGGATGAGGCACTGATCAAGTCGATTACAGTTTGCAAGTACAAGAGAGGAGATGGATTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCAGTGAGTTTCAAGAGGATGAGAGCCTTAAGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGCATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTGTGTCGTGCGAATGTCGTCTCTGTCACTGCCTCTTCTCCAGTTCAACTGCCTCTAAACACTGAAAGTCACTTAACTAGTGAGGCCATGCCAGAGACTTCTCAGGAAAATGACCACGAGGCTATTTTGCAAGAGTCTGGAAGAAGTTTCAGGAATGAGCATGCGAAGAATTCGGTTCGCGCTTTCAGTGATCTCGGAAATGTGGAGAAAAGAGATACTGTCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAACGATATCATTATCGCCAATGTTCTACGTCTAAATGAAGATGAGTTTGGAGCTGTTGATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAACAATCAATGGGAGAAGACAGTAAGTCAAGTCATAGAAAAAGAATCTTGCATTATGTGATGAGTCCTATTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTATCTCACAAACCATGGAAGAGAACATAGAGCTACTTGA 1071 42.11 MGSYGSPKTWIPYMDNKDCSQGFCSVYCPQWCYIMFSPPPPLEFQDDDSGPNFSPLVIAIVGILASAFLLISYYTIISKYCGHTNRLSRTRDHGPDEEFEDNYNPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLKLLPKCSHAFHLQCIDTWLKSHSNCPLCRANVVSVTASSPVQLPLNTESHLTSEAMPETSQENDHEAILQESGRSFRNEHAKNSVRAFSDLGNVEKRDTVIELRDGRLQQIRRSISMDHCSQNDIIIANVLRLNEDEFGAVDEAGSSGDVGSSKQSMGEDSKSSHRKRILHYVMSPISMKRSFSSGRFYLTNHGREHRAT 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70029083 70032324 + Sed0008071.1 Sed01g4114 703418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4114 356 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Sed01g4114 356 SMART ring_2 143 184 IPR001841 -
Sed01g4114 356 Pfam Ring finger domain 142 185 IPR001841 -
Sed01g4114 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Sed01g4114 356 MobiDBLite consensus disorder prediction 298 323 - -
Sed01g4114 356 CDD RING-H2_EL5-like 142 185 - -
Sed01g4114 356 FunFam RING-H2 finger protein ATL54 118 191 - -
Sed01g4114 356 PANTHER RING-H2 FINGER PROTEIN ATL16 26 321 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Sed01g4114 356 SUPERFAMILY RING/U-box 131 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4114 Sed-Chr1:70029083 Sed12g0332 Sed-Chr12:2087502 1.20E-68 dispersed
Sed10g1872 Sed-Chr10:35599711 Sed01g4114 Sed-Chr1:70029083 2.80E-43 transposed
Sed01g4114 Sed-Chr1:70029083 Sed05g0301 Sed-Chr5:1911640 5.60E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4114 - - - 0.0