Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g4114 | ATGGGGTCTTATGGCAGCCCTAAAACTTGGATACCATATATGGACAACAAAGATTGCTCTCAAGGTTTCTGTAGTGTCTATTGTCCTCAATGGTGCTACATCATGTTTTCACCTCCACCACCCTTAGAGTTTCAAGATGATGATTCAGGTCCTAATTTTTCACCTCTTGTGATTGCTATTGTTGGAATTCTGGCAAGTGCTTTTCTTCTTATAAGCTATTACACCATCATTTCAAAGTATTGTGGCCATACGAATCGACTGTCTAGGACTAGAGACCATGGCCCAGATGAGGAATTTGAAGATAATTACAACCCGACACTTCACGAGCCGTGGCATGTTGCCACTACTGGCTTGGATGAGGCACTGATCAAGTCGATTACAGTTTGCAAGTACAAGAGAGGAGATGGATTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCAGTGAGTTTCAAGAGGATGAGAGCCTTAAGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGCATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTGTGTCGTGCGAATGTCGTCTCTGTCACTGCCTCTTCTCCAGTTCAACTGCCTCTAAACACTGAAAGTCACTTAACTAGTGAGGCCATGCCAGAGACTTCTCAGGAAAATGACCACGAGGCTATTTTGCAAGAGTCTGGAAGAAGTTTCAGGAATGAGCATGCGAAGAATTCGGTTCGCGCTTTCAGTGATCTCGGAAATGTGGAGAAAAGAGATACTGTCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAACGATATCATTATCGCCAATGTTCTACGTCTAAATGAAGATGAGTTTGGAGCTGTTGATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAACAATCAATGGGAGAAGACAGTAAGTCAAGTCATAGAAAAAGAATCTTGCATTATGTGATGAGTCCTATTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTATCTCACAAACCATGGAAGAGAACATAGAGCTACTTGA | 1071 | 42.11 | MGSYGSPKTWIPYMDNKDCSQGFCSVYCPQWCYIMFSPPPPLEFQDDDSGPNFSPLVIAIVGILASAFLLISYYTIISKYCGHTNRLSRTRDHGPDEEFEDNYNPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLKLLPKCSHAFHLQCIDTWLKSHSNCPLCRANVVSVTASSPVQLPLNTESHLTSEAMPETSQENDHEAILQESGRSFRNEHAKNSVRAFSDLGNVEKRDTVIELRDGRLQQIRRSISMDHCSQNDIIIANVLRLNEDEFGAVDEAGSSGDVGSSKQSMGEDSKSSHRKRILHYVMSPISMKRSFSSGRFYLTNHGREHRAT | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 70029083 | 70032324 | + | Sed0008071.1 | Sed01g4114 | 703418 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g4114 | 356 | ProSiteProfiles | Zinc finger RING-type profile. | 143 | 185 | IPR001841 | - | |
Sed01g4114 | 356 | SMART | ring_2 | 143 | 184 | IPR001841 | - | |
Sed01g4114 | 356 | Pfam | Ring finger domain | 142 | 185 | IPR001841 | - | |
Sed01g4114 | 356 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 193 | IPR013083 | - | |
Sed01g4114 | 356 | MobiDBLite | consensus disorder prediction | 298 | 323 | - | - | |
Sed01g4114 | 356 | CDD | RING-H2_EL5-like | 142 | 185 | - | - | |
Sed01g4114 | 356 | FunFam | RING-H2 finger protein ATL54 | 118 | 191 | - | - | |
Sed01g4114 | 356 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 26 | 321 | IPR044600 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
Sed01g4114 | 356 | SUPERFAMILY | RING/U-box | 131 | 193 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g4114 | Sed-Chr1:70029083 | Sed12g0332 | Sed-Chr12:2087502 | 1.20E-68 | dispersed | |
Sed10g1872 | Sed-Chr10:35599711 | Sed01g4114 | Sed-Chr1:70029083 | 2.80E-43 | transposed | |
Sed01g4114 | Sed-Chr1:70029083 | Sed05g0301 | Sed-Chr5:1911640 | 5.60E-175 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g4114 | - | - | - | 0.0 |