Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4116 ATGAGTCTTGATGCTCTTTCCTCCAATGACTTGTTCAACTCCATCATCTACGACACCATCACCGCAACCCCGAACACTTCCCTCGGCCACCACGACACGTCAAAGACTACTTTTCTTTCCGACGACAAGTCTATGAAGCATGAAGGTCACCACCAACATGAGTTCCAATGTCATCCAAAACCAAATTCTACGGTGTCAAAAAAACGTCGCCCAAGCGAGGCGGAAAGCAACCGAGTGACACCCTTGAGGAAGAGGAAGAGAAAACCAAAAGCATGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTTTTGTTGAAAGGAACCGCCGCAAGCAAATGAATGAGCATCTTTCAATGTTACGTTCCCTCATGCCAGAATCCTATGTTCAAAGGGGTGACCAAGCCTCCATAGTAGGTGGAGCAGTTGAGTTTGTGAAGGAATTGGAGCATATTCTATCAACTCTTGAAGCCAAAAAGCTCAAAATCTTACACCAAGTAGAAGAAAAGCAAGAAGAGATCAATAATGATAACAATGAAGATTATTCAGTGAGATCAAGGAAACTGTTCTTTTCAACATTGCTGGTGCAATCAGATGATCATCAAAGCTCAACCAAATACATATCCAAATCCAAGGCTTGTTCAGCTGAAATTGAAGTCACTTTGATTGAAACTCATGCAAATCTAAGAATCCTTTCAACAAGAACCCATAGACAGCTCTTGAAGCTCATTGTTGGCTTCCAGTCTCTTCTTCTCACTATTCTTCATCTCAATGTCACTGACTTCCATCCACTGGTTCTTTACTCCATCAGCCTCAAGGTATGCCCAACTTTCCGATATCGTCCAACACTCAACAATTTTAGTCACCGTCGTCCTTCAACTTTCAAAATGTTTTTTTATGGTTAA 912 41.67 MSLDALSSNDLFNSIIYDTITATPNTSLGHHDTSKTTFLSDDKSMKHEGHHQHEFQCHPKPNSTVSKKRRPSEAESNRVTPLRKRKRKPKACKNKEEAETQRMTHIFVERNRRKQMNEHLSMLRSLMPESYVQRGDQASIVGGAVEFVKELEHILSTLEAKKLKILHQVEEKQEEINNDNNEDYSVRSRKLFFSTLLVQSDDHQSSTKYISKSKACSAEIEVTLIETHANLRILSTRTHRQLLKLIVGFQSLLLTILHLNVTDFHPLVLYSISLKVCPTFRYRPTLNNFSHRRPSTFKMFFYG 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70032610 70036188 - Sed0014833.2 Sed01g4116 703420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4116 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 151 IPR011598 GO:0046983(InterPro)
Sed01g4116 303 Gene3D - 92 179 IPR036638 GO:0046983(InterPro)
Sed01g4116 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 171 IPR036638 GO:0046983(InterPro)
Sed01g4116 303 MobiDBLite consensus disorder prediction 43 57 - -
Sed01g4116 303 Pfam Helix-loop-helix DNA-binding domain 101 152 IPR011598 GO:0046983(InterPro)
Sed01g4116 303 PANTHER TRANSCRIPTION FACTOR FAMA 45 277 IPR044283 GO:0003700(InterPro)|GO:0010052(InterPro)
Sed01g4116 303 MobiDBLite consensus disorder prediction 43 100 - -
Sed01g4116 303 Coils Coil 155 182 - -
Sed01g4116 303 SMART finulus 106 157 IPR011598 GO:0046983(InterPro)
Sed01g4116 303 MobiDBLite consensus disorder prediction 66 80 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4116 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4116 Sed-Chr1:70032610 Sed05g0303 Sed-Chr5:1914558 1.60E-90 dispersed
Sed01g4115 Sed-Chr1:70032610 Sed01g4116 Sed-Chr1:70032610 3.90E-148 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g680 . Blo03g00120 Bda06g01272 Bda08g00632 Bpe05g00526 . . . . . Cma02g01618 . Car02g01378 . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00104 . . . . . . . Bma05g00711 . Sed01g4116 Cmo02g01663 Cmo19g00245 . . . . . . Bhi05g00483 Tan07g1987 Cmetu04g0326 Lac11g2424 Hepe06g1782 . Lcy12g1955 Cla09g01111 Cam09g1166 Cec09g1173 Cco09g1188 . . Cre09g1126 . Csa03g04599 . Cme04g00128
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007772 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 0 1 4 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37438 PF00010 HLH 9.30E-10 No_clan Sed TF