Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4129 ATGAGAAACGCCGGTTGCGGAGGCCGGCGAGATGATCAGAATCGAACGAAAGAAGCTTGGATCGCCAAAAACGCGAATCAAACACAGAATCATTCTTCTACATCCAATTCTCAACGCTCCAACCTCGGAAATCGTCCTTCCACCAGTCGTGATTCTAATTCCAACTACGAGCATCGGAATCGCCACCGCCGCCGCCGCTTCCGTCACCAGTCCGTCGAGAAAACGGAGGTGAGTGGAATTGAATCCTTCACTTGCGATGAGACGCCTGTGGAAGTTGAGGAAAGATGCGGAGTTGTTGAATCTGGAATTTCTAGCTCGAGTGAGGTTAAGGATGTTGTTTTCAGTAGGTTAGAGATGATGCAGCGCGGTTTCGAGGAGCCGGATTTGTCGGAGGAGCAGCTGAGGATTAATGATCAGTTGCAGGAAGATGAGTTGATGGCTTTGGAATCCATATATGGAGAAAATGTGTATATCCTTGATGAACAAAGAGGGCAGCGATGTTTCCAGATTTCCATCCATATTGAGAGTCTTGGTGAAATTGCTGTAACTGCAAAACTTGATTCATCTGGTGATTTTTTGATGAAAAACACTAATTCTGATGAATTTTCTTATACTTTCAAAGTCAAGTATCTTAAACCTATTGTTTTGACCTGTTTATTACCTAAATCGTATCCTAGTCACCTACCTCCATATTATACCATCTCCATCCCATGGTTGGACTCCACTAGAATTTCGAGTCTTTGCTCCATGTTGGATGCAATATGGACCGAACAAGTAGGGCTTGAAGTTGTATATCAATGGGTAGAATGGCTACAAATGTCTTCTCTGGCCTATCTTCAGCTGGATAAAGAGATATCGCTTGGTCCTTATGACAAGGAACATTTAGGCGATACACGTGCAGTTTCAGGGAGTGTTTCTCCAGAGGTTGATGTTCCTGCTATGATAAATTATGACACTCAGAAACGTGATGAGGACTTCTTCATGAACTTGCAGGAATGCTGCATCTGTTTGAGTCAGTATGCAGGTACAAAGTTTGTGAGATTGCCATGTAAGCATTACTTTTGTTGGAAATGCATGGAGACGTACACAAACATGCACGTCAAGGAAGGCACCATAAGCAAACTCAAATGTCCAGATTCCAAATGCGATGTTATGGTTCCTCCCGGTCTTTTGAAGCAATTGCTTGGTGATGAAGAGTTCGAAAGATGGGAATCCATATTGCTGACTAAAACACTGGAATCCATGTCAGATGTGGTCTATTGCCCCAGGTGTGAAACCCCCTGCCTAGAGGATGTAGATCACGATGCTCAATGCTCAAAGTGCTACTTCAGTTTTTGTACACTATGTAACGAGCGACGTCATGTCGGAGTCGAATGTATGACTCCAGAAATGAAGCTTCGTCTGCTTGAGGAGCGTCAAAATTCAACACAGTTAGGTAGTGATCAAAGACGTAAGGAACGCGAGATGATAAATGAGCTTATAAGTGTCAAGGAAATACTTCGCGATGCCAAGCAATGCCCATCCTGCAAAATGGCAATATCGCGGACTGAGGGTTGCAATAAGATGGTTTGCAATAACTGTGGACAGTATTTCTGTTACCGCTGTGGCAAGGCAATTGATGGATATGATCATTTCAGGGAGGGTGCATGCGAATTGTTCTCGGAAGATGCCATTCAACAGTGGGAAGAACGTATGAATGCACGGCAGGTGATCGGCCAGATTCAAGCAGTACTTTTTGCTGAACATGGTCATCCATGTCCTAACTGTGGTCAAATTAATGCCAAGGTTGAGAATAATAATCACATACGTTGCTGGGCATGTCAAAGCCACCACTGCTATTTATGCAGAAAAGTTGTGAAGCGCAGCTCTCAGCATTATGGACCCAAGGGATGCAAACAACATACTGCTGGTTGA 1914 44.04 MRNAGCGGRRDDQNRTKEAWIAKNANQTQNHSSTSNSQRSNLGNRPSTSRDSNSNYEHRNRHRRRRFRHQSVEKTEVSGIESFTCDETPVEVEERCGVVESGISSSSEVKDVVFSRLEMMQRGFEEPDLSEEQLRINDQLQEDELMALESIYGENVYILDEQRGQRCFQISIHIESLGEIAVTAKLDSSGDFLMKNTNSDEFSYTFKVKYLKPIVLTCLLPKSYPSHLPPYYTISIPWLDSTRISSLCSMLDAIWTEQVGLEVVYQWVEWLQMSSLAYLQLDKEISLGPYDKEHLGDTRAVSGSVSPEVDVPAMINYDTQKRDEDFFMNLQECCICLSQYAGTKFVRLPCKHYFCWKCMETYTNMHVKEGTISKLKCPDSKCDVMVPPGLLKQLLGDEEFERWESILLTKTLESMSDVVYCPRCETPCLEDVDHDAQCSKCYFSFCTLCNERRHVGVECMTPEMKLRLLEERQNSTQLGSDQRRKEREMINELISVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCGKAIDGYDHFREGACELFSEDAIQQWEERMNARQVIGQIQAVLFAEHGHPCPNCGQINAKVENNNHIRCWACQSHHCYLCRKVVKRSSQHYGPKGCKQHTAG 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70095979 70100465 + Sed0025660.1 Sed01g4129 703433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4129 637 SUPERFAMILY RING/U-box 330 414 - -
Sed01g4129 637 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 177 547 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Sed01g4129 637 SMART ibrneu5 488 550 IPR002867 GO:0008270(InterPro)
Sed01g4129 637 SMART ibrneu5 401 459 IPR002867 GO:0008270(InterPro)
Sed01g4129 637 ProSiteProfiles Zinc finger RING-type profile. 333 381 IPR001841 -
Sed01g4129 637 SMART ring_2 506 589 IPR001841 -
Sed01g4129 637 SMART ring_2 333 380 IPR001841 -
Sed01g4129 637 MobiDBLite consensus disorder prediction 1 73 - -
Sed01g4129 637 ProSitePatterns Zinc finger RING-type signature. 350 359 IPR017907 -
Sed01g4129 637 SUPERFAMILY RING/U-box 575 633 - -
Sed01g4129 637 CDD RING-HC_ITT1-like 330 386 - -
Sed01g4129 637 Pfam IBR domain, a half RING-finger domain 401 459 IPR002867 GO:0008270(InterPro)
Sed01g4129 637 ProSiteProfiles RWD domain profile. 143 278 IPR006575 GO:0005515(InterPro)
Sed01g4129 637 Pfam IBR domain 503 537 - -
Sed01g4129 637 FunFam RBR-type E3 ubiquitin transferase 474 580 - -
Sed01g4129 637 Pfam RWD domain 139 272 IPR006575 GO:0005515(InterPro)
Sed01g4129 637 SUPERFAMILY RING/U-box 492 545 - -
Sed01g4129 637 Gene3D - 475 578 - -
Sed01g4129 637 Gene3D Ubiquitin Conjugating Enzyme 130 281 IPR016135 -
Sed01g4129 637 ProSiteProfiles TRIAD supradomain profile. 329 555 IPR044066 -
Sed01g4129 637 SUPERFAMILY RING/U-box 401 463 - -
Sed01g4129 637 SMART RWD2001b 143 278 IPR006575 GO:0005515(InterPro)
Sed01g4129 637 SUPERFAMILY UBC-like 137 272 IPR016135 -
Sed01g4129 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 416 IPR013083 -
Sed01g4129 637 MobiDBLite consensus disorder prediction 19 51 - -
Sed01g4129 637 FunFam RBR-type E3 ubiquitin transferase 328 412 - -
Sed01g4129 637 MobiDBLite consensus disorder prediction 1 18 - -
Sed01g4129 637 CDD BRcat_RBR_RNF14 412 463 - -
Sed01g4129 637 Pfam Ring finger domain 331 377 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4129 K11971 - - csv:101211646 1031.55
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30