Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4133 ATGTATGGGGATTGCCAAGTAATGTCAAACAACATGGGAGGAAACATGGTTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAACTTCATGTCCAATTTCCAACATTTTCCTTCCATTGTTCCTAAGGAAGAAAATGGATTGATGATGAGAGGAAAAGAAGATATTATGGAAAGTGGGTCTGGAAGTGAACAAATTGTTGAAGAAAATCTAGGAATTGAAATGGAAAGTAATGATAATATTATTCAGCAAAATCAAAAGAAAAAACGTTATCATAGGCACACTGCTCGCCAGATCCAAGAAATGGAAAGTTTGTTTAAGGAATGTCCACACCCAGATGACAAACAAAGGCTAAAACTCAGCCAAGAACTTGGCCTCAAACCTCGCCAAGTCAAGTTTTGGTTCCAAAATCGCAGAACTCAAATGAAGGCACAACAAGACAGATCTGATAATGTGATACTTAGGGCTGAAAATGATAGCTTAAAGAATGAGAATTATAGACTGCAAAGTGCCCTAAGAAATATCATATGCCCTAGCTGTGGAGGGCAAGGTATCCTAGGAGAGCCAAGTTTGGATGAACAACAGCTTCGCATTGAGAATGCTAGACTTAGAGAGCAGTTGGAACAAGTTTGCTCATTGACCACAAGATACAGTGGTCGCCCAATCCAAGGGATGGCCTCCACAGCTCCTCCTCTTATGCAACCATCTTTGGATTTGGACATGAACATATACTCGAGGCAATACTCCGAGGCCATGGTTTCGTCCTCCGAAATGATGCCGCTGCCTTCCATGCTCCCGCCCGAGGCTGCCCACTTCCCGGAAGGCGGACTATTGATCGAGGAGGAAAAGACACTCGCAATGGATCTCGCTGTGTCTTCCATGGCTGAACTCATTAAGATGTGTCGCTCATCCGACCCTCTTTGGATTCGAAATAGCGAGAGCGGTAAGGAAGTTCTGAATGTCGACGAGCATGCCAGGATGTTTTCGTGGCCATTGAACCTCAAACAACACTTGATGAACGAGTTTAGGACCGAAGCCACTCGCGATAGCGCCGTGGTTATAATGAATAGCATCACGCTCGTCGACGCCTTTCTCGACGCTAACAAATGGATAGAGTTATTTCCTTCAATTGTGTGCAAAGCAAAGACTGTGCAAGTGATTTCATCAAGTGTTTCAGGCCATGCCAGTGGGTCCCTTCAGCTGATGTATGCAGAACTTCAGTCTCTTTCTCCTCTGATTCCAACGAGAGAAGCTCATTTTCTCCGGTGCTGCCAGCAGAATGCCGAAGAAGGAAGCTGGGCCATCGTCGATTTCCCGATCGACAGCTTCCACGATACCCTTCAACATTCGTTTCCGAGATATCGAAGAAGGCCCTCTGGCTGCATTATTCAGGACATGCCCAATGGATATTCTAGGGTAACATGGGTGGAGCATGCAGAGATAGAAGAAAAGCCAATCCATCAAATATTCAATCACTTTGTGCATAGTGGAATGGCTTTTGGAGCACATCGCTGGCTGGCTATCTTACAAAGACAATGCGAGAGAATTGCAAGCCTTATGGCTAGAAACATTTCTGACCTTGGAGTGATACCTTCACCAGAAGCAAGACAGAACCTAATGAAACTGGCTCAAAGAATGATCAGAACTTTCTCTGTTAACATTAGCGCCTCGGGTGGCCAGTCGTGGACAGCGTTGTCGGATTCTCCCGACGATACCGTTCGTATAACCACCCGAAAAGTTGTTGAGCCTGGCCAACCCAATGGAGTTATTCTCAGCGCTGTTTCTACTACTTGGCTTCCCTATCCTCATTACCGTGTCTTTGATCTTTTACGAGATGAACGACGACGGTCTCAGCTGGAGGTTCTTTCTAATGGGAATTCATTACATGAGGTTGCTCATATTGCGAATGGCTCTCACCCTGGAAATTGCATCTCTCTTCTCCGTATCAATGTGGCTAGCAACTCCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGCTGCACGGACCAATCCGGCAGCCTCGTCGTTTACGCGACGATCGACGTGGATTCGATTCAATTAGCCATGAGTGGAGAAGATCCGTCCTGCATTCCCCTCCTCCCCATAGGATTTTCCATCGTCCCTGTCGTCAGTTCTACTACCGACGGACACCCAACACCACCACCGGAAGATGGTGCCTCTAATGCTGCAGCCCTCGACTCCGGCTGCCTCCTAACCGTCGGCCTTCAAGTTCTAGCCAGCACCATTCCATCTGCAAAGCTCAACCTATCTAGCGTAACCGCCATCAACAACCATCTCTGTAACACGGTGCACCAAATCAACACCGCTCTAGGCAGCCCGACTCGCCCGGAAAACAACAATCCTGCTGCCGAGCCTAATCCTGCACCGATGCCGCCGCCACCGCCACTTCCACTTCCGCCCAAGCAATGA 2442 47.46 MYGDCQVMSNNMGGNMVSSESLFSSPIQNPNFNFMSNFQHFPSIVPKEENGLMMRGKEDIMESGSGSEQIVEENLGIEMESNDNIIQQNQKKKRYHRHTARQIQEMESLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENDSLKNENYRLQSALRNIICPSCGGQGILGEPSLDEQQLRIENARLREQLEQVCSLTTRYSGRPIQGMASTAPPLMQPSLDLDMNIYSRQYSEAMVSSSEMMPLPSMLPPEAAHFPEGGLLIEEEKTLAMDLAVSSMAELIKMCRSSDPLWIRNSESGKEVLNVDEHARMFSWPLNLKQHLMNEFRTEATRDSAVVIMNSITLVDAFLDANKWIELFPSIVCKAKTVQVISSSVSGHASGSLQLMYAELQSLSPLIPTREAHFLRCCQQNAEEGSWAIVDFPIDSFHDTLQHSFPRYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNHFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISASGGQSWTALSDSPDDTVRITTRKVVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPVVSSTTDGHPTPPPEDGASNAAALDSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINTALGSPTRPENNNPAAEPNPAPMPPPPPLPLPPKQ 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70128635 70136528 + Sed0015704.1 Sed01g4133 703437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4133 813 SUPERFAMILY Bet v1-like 285 521 - -
Sed01g4133 813 CDD START_ArGLABRA2_like 287 518 - -
Sed01g4133 813 Pfam START domain 294 519 IPR002913 GO:0008289(InterPro)
Sed01g4133 813 SUPERFAMILY Bet v1-like 560 777 - -
Sed01g4133 813 Gene3D - 300 517 IPR023393 -
Sed01g4133 813 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677(InterPro)
Sed01g4133 813 SMART START_1 292 519 IPR002913 GO:0008289(InterPro)
Sed01g4133 813 CDD homeodomain 92 150 IPR001356 GO:0003677(InterPro)
Sed01g4133 813 MobiDBLite consensus disorder prediction 791 813 - -
Sed01g4133 813 SMART HOX_1 90 153 IPR001356 GO:0003677(InterPro)
Sed01g4133 813 Pfam Homeodomain 92 147 IPR001356 GO:0003677(InterPro)
Sed01g4133 813 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 84 781 IPR042160 -
Sed01g4133 813 Coils Coil 197 217 - -
Sed01g4133 813 ProSiteProfiles START domain profile. 283 522 IPR002913 GO:0008289(InterPro)
Sed01g4133 813 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed01g4133 813 MobiDBLite consensus disorder prediction 780 813 - -
Sed01g4133 813 FunFam Homeobox-leucine zipper protein HDG1 78 165 - -
Sed01g4133 813 SUPERFAMILY Homeodomain-like 81 150 IPR009057 -
Sed01g4133 813 Gene3D - 78 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4133 Sed-Chr1:70128635 Sed08g2020 Sed-Chr8:34486103 1.90E-186 dispersed
Sed01g4133 Sed-Chr1:70128635 Sed09g0079 Sed-Chr9:618782 4.90E-174 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37442 PF01852 START 4.30E-43 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4133 - - - 0.0