Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4134 ATGGAGCTATTTCCAGCACAGCCAGATTTGTCACTCCAAATTAGCCCTCCAAATACAAATAAACCCTCTTCCACTTGGAGAAGATCCACAACCTCACAAGAAGAAGAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTCAATTTAGACTCTTCTAATCCTAAAACCACTCCCAAACATCACCCTAACCACTTTGATCTCTCACTTTCTAATTTCAACCAAATTAACCATCACCAATACTCCAATATTCCTCTTCCTCTTCATCATCATCATCTTCATCACCATCATCATCATCATCATCCCGCTATCAACGGCGGTGGTAACCTCTTCGAAACCCTACACAAAACCCACCACCGTCCCGCAATTTTCCACCACAATCCGCCGCCGTTGGAGCCACCAACCTCGCTCCCGTTCCCGGGGTCGAACAATGTCCAAGACTTGGGATTCTTGCGACCCATTAGAGGAATTCCGGTGTACCACCAGACATCTAACCCTACCGGACCTGGCGGTGGGGGAATCGCTCCCTCGGGTGCCGGCCACGGCCAGATTATGATGCGATCGAGATTCTTGTCGAGGTTTCCGGGCAAACGGAGCATGAGAGCCCCAAGGATGAGATGGACTTCTACTCTTCATGCTCGTTTTGTTCATGCTGTTGAACTCCTCGGTGGCCATGAAAGAGCTACGCCGAAGTCGGTTCTCGAGCTTATGGATGTGAAAGATCTAACCTTGGCCCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGATTTCTACGAAAATGCTTCATCAGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAACCATCAATGGGGAGACAAAATGAGCACTCAATTCAACAAAATAGGCAAAACCCTCATCAAGACAAGGATTATCAAGCCCTATGGAGCAATTCTTCAAGGGAAGCTTGGTTGCAAGGTTTGCCTAATGATTCTTCTAGGGACCTTTCTTCGTCTCTCGAGAATGATCTGGATCCTAAGAGTTCAAACAATGAGAGATTATCAGAAATAAGCTCATCGACAAATATTGAGAAGCCTAATTTGGAATTCACATTAGGAAGGCCAGTTTGA 1134 45.24 MELFPAQPDLSLQISPPNTNKPSSTWRRSTTSQEEEEEVDLGFWNNLNLDSSNPKTTPKHHPNHFDLSLSNFNQINHHQYSNIPLPLHHHHLHHHHHHHHPAINGGGNLFETLHKTHHRPAIFHHNPPPLEPPTSLPFPGSNNVQDLGFLRPIRGIPVYHQTSNPTGPGGGGIAPSGAGHGQIMMRSRFLSRFPGKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDFYENASSGDTSNIEDIIFDIQKPSMGRQNEHSIQQNRQNPHQDKDYQALWSNSSREAWLQGLPNDSSRDLSSSLENDLDPKSSNNERLSEISSSTNIEKPNLEFTLGRPV 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70167897 70173446 + Sed0026002.1 Sed01g4134 703438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4134 377 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677(InterPro)
Sed01g4134 377 MobiDBLite consensus disorder prediction 292 311 - -
Sed01g4134 377 MobiDBLite consensus disorder prediction 11 29 - -
Sed01g4134 377 MobiDBLite consensus disorder prediction 1 39 - -
Sed01g4134 377 Gene3D - 201 258 - -
Sed01g4134 377 MobiDBLite consensus disorder prediction 327 377 - -
Sed01g4134 377 MobiDBLite consensus disorder prediction 352 368 - -
Sed01g4134 377 Pfam Myb-like DNA-binding domain 203 254 IPR001005 -
Sed01g4134 377 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 107 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Sed01g4134 377 SUPERFAMILY Homeodomain-like 199 255 IPR009057 -
Sed01g4134 377 FunFam Myb family transcription factor 200 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4134 Sed-Chr1:70167897 Sed04g0869 Sed-Chr4:7655694 9.80E-69 dispersed
Sed01g4134 Sed-Chr1:70167897 Sed01g4135 Sed-Chr1:70167897 5.00E-198 tandem
Sed01g4134 Sed-Chr1:70167897 Sed04g0868 Sed-Chr4:7655694 6.80E-70 wgd
Sed01g4134 Sed-Chr1:70167897 Sed05g0260 Sed-Chr5:1545842 1.40E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37443 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4134 - - - 0.0