Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4140 ATGAATATGGAAACCAAGTTAACTAAGGTTATGGAAGATGGAAAAAAGATTGTTGTGGGTTTGAAGAGGAAAAGGGAAAATCAAGGCACGACTCATGTTGGAGCTGGCTACAAAGCATTTCTGTCTGAGTTGACCTCATCTAGAAATAGACATGCCAAGTGCAAGAGACTTGATGACCGTGAAGTCGGTTGTGGGTCAAACTCAAGAAGATCTTTTCTTAGAAATTATAAAAAATTTGGCAGGAGTGGGCTTCCCCAGAGGTTTTTATATCATGAAGATGGGGATTGGGTAGATTACCCTCAGATAATTGTTGAGTTGATTAGGAAACAGTTTCAAGTAAAAAATGCTGCAATTGAAGTGGAACTTGATGGTCGCCATTTGCTTGTAGATGCTCTGTATATGATCCAAGTGGAACTTAAAACAGCTACTCAGCAGCACATTGCCTGGATTGATGACAATGGCGGATGTTTCTTTCCCGAATTCTATTCGGATGACAGTGTGATTCATCAATTCCACCAGTATGAGCTGGAAGATGCTTCTGCTGTTGGTTTACCGGACCATACAGGAATGGGAGAGATCAATCTGCATCTTGAAATTGGAATAACGGAAGCTAATAGTTCTCAATCAGAAGAGTATGTTGAAGAGTCAAATAGGGACAGCAAGATACATGTTATTAAAGAAAAATCTTGTGATTTTAGTGGAGATTGGGAAGGTAGTGAAGCTGAAAGTCAGAAACTGGTTGCGGAAATGCCAGAGGCTGTTGGAGAAATTAAAGAGATTGGTTGTTCTATGACACCTCAAAATGAACTAATGCATTCAACTCTTGATTCTGACGATGTAAAAAATATGTTTTTAACAGCCTTGAGGCCTACTATGAACAACATCGAAGTACTTGAGGTCAAACGCTGGTCTAGTCATTTAATGCAAGATAGCCCAGATATGTTTCAAAAACAAATAGAGATAATAAGGAAGAGTCGTGGGAATGCCAATGTTCAATATGGCTGGCTTCCTGTGAATAAAGGTGCTCTATCTGGTAGCATGCTATATGGGGGGGGTCATTCTGGACTGAAGTTTGAATCCTCATATGGTATTCACCTTTCACCTACAAGCTGCGCGCATGTTAGTGCGCGCAATTGTGATGATGATGAAAAAGGGGTTAGATACATAGTGTTCTGTCGTGTCATATTGGGAAATGTGGAAGTTGTCACTCCTGGATGTGGGCTATATCGTCCCAGTTCTGTGAACTTTGACAGTGGAGTAGATGATCTTCATAATCCAAGTCAATATATAGTTTGGAATATGAATGTGAAAAGCCACATTTTCCCGGAATTTGTTGTCAGTTTCAAGATATCATCAAGTCGTCCTGAACAAGGTGTTCCAGCTTTCAAAAACCAAGGAATATGTTTTGAAGGGCTTCAGGACCAATTGCGGTTAAATGGCTCTTCGATTGAATCTGAGGATTGTGCATCTTCGCCAGCTCCCAAAAAGAGATGCACAGAAAAGCTTGACTATGGATCTAGCTCCCTGAAGATTCCAAAGTCCCCCTGGATGCCTTTTTCAATGTTGTTTGATGCCATTTCCAAAGAAGTCTCTCTTAATAACATGAAATTAGTACACACTCATTATGACATATTTAGAGAAAAGAAAATCAGTAGGGCTGAATTCGTAAGAAGGTTGAGGTCCATTGTTGGGGATCCGTTACTGAGGTCTACGTTAACTAGTCTTCAGTGCAAGCTGCCCCCAAAGTATTCGTGTACTTTGAAAGTTCCAAAAGAGGAGAAAGAATGA 1788 40.32 MNMETKLTKVMEDGKKIVVGLKRKRENQGTTHVGAGYKAFLSELTSSRNRHAKCKRLDDREVGCGSNSRRSFLRNYKKFGRSGLPQRFLYHEDGDWVDYPQIIVELIRKQFQVKNAAIEVELDGRHLLVDALYMIQVELKTATQQHIAWIDDNGGCFFPEFYSDDSVIHQFHQYELEDASAVGLPDHTGMGEINLHLEIGITEANSSQSEEYVEESNRDSKIHVIKEKSCDFSGDWEGSEAESQKLVAEMPEAVGEIKEIGCSMTPQNELMHSTLDSDDVKNMFLTALRPTMNNIEVLEVKRWSSHLMQDSPDMFQKQIEIIRKSRGNANVQYGWLPVNKGALSGSMLYGGGHSGLKFESSYGIHLSPTSCAHVSARNCDDDEKGVRYIVFCRVILGNVEVVTPGCGLYRPSSVNFDSGVDDLHNPSQYIVWNMNVKSHIFPEFVVSFKISSSRPEQGVPAFKNQGICFEGLQDQLRLNGSSIESEDCASSPAPKKRCTEKLDYGSSSLKIPKSPWMPFSMLFDAISKEVSLNNMKLVHTHYDIFREKKISRAEFVRRLRSIVGDPLLRSTLTSLQCKLPPKYSCTLKVPKEEKE 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70190331 70202141 - Sed0013180.5 Sed01g4140 703444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4140 595 ProSiteProfiles RST domain profile. 510 581 IPR022003 -
Sed01g4140 595 ProSiteProfiles PARP catalytic domain profile. 248 471 IPR012317 GO:0003950(InterPro)
Sed01g4140 595 ProSiteProfiles WWE domain profile. 74 149 IPR004170 -
Sed01g4140 595 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 48 579 IPR044964 -
Sed01g4140 595 Gene3D - 268 450 - -
Sed01g4140 595 Pfam RCD1-SRO-TAF4 (RST) plant domain 512 576 IPR022003 -
Sed01g4140 595 SUPERFAMILY ADP-ribosylation 362 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4140 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4138 Sed-Chr1:70190331 Sed01g4140 Sed-Chr1:70190331 0.00E+00 dispersed
Sed01g4140 Sed-Chr1:70190331 Sed05g0257 Sed-Chr5:1514172 8.60E-261 dispersed
Sed01g4139 Sed-Chr1:70190331 Sed01g4140 Sed-Chr1:70190331 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0489 . . . . . . Blo03g00881 . . . . Bpe11g00316 . . Sed01g4140 . . . . . . . . Bhi05g00448 Tan07g2008 Cmetu06g2068 Lac11g2449 Hepe06g0991 . Lcy12g1971 Cla09g01093 Cam09g1147 Cec09g1156 Cco09g1172 . . Cre09g1110 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007308 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 8 1 0 37