Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4150 ATGGCAGTTTGTATAGTGTACACAACCCAAGCTCTAAACTCAACCTTCTCATCATCAACAACAAAATCCCACTTGGGATTCCACCAAAAGCACCAACTGGTTTTCTTGAGCAGCAGCAATGGGAAGAAGTGCGACAGCAAAGCGACCAGCCGCTATGTGATAACCTGCTCGGCTGGTGAACAACAGACAGTGGTGATCGGTCTAGCAGCAGATTCCGGGTGTGGGAAAAGCACATTCATGAGGAGGCTAACAAGTGTGTTTGGAGGGGCAGCAGAGCCACCCAGGGGTGGCAACCCAGACTCAAACACACTCATCAGTGACACTACAACTGTGATATGTTTAGATGACTATCACTCATTGGACAGAACAGGGAGAAAAGAGAAGGGAGTCACAGCACTTGACCCAAGAGCCAATGATTTTGACCTTATGTATGACCAAGTTAAGGCCATTAAAAATGGTGTGGCTGTTGATAAGCCAATTTACAATCATGTCACTGGCCTTCTTGACCCTCCTGAGCTCATTAAACCACCTAAGATCCTTGTCATTGAAGGCTTACACCCCATGTATGATTCAAGAGTAAGAGACCTGCTGGACTTCAGTATCTACCTGGACATCAGCAATGAAGTTAAATTTGCATGGAAAATTCAGAGAGACATGGCTGAGAGAGGACACAGTCTCGAAAGCATCAAAGCGAGTATCGAAGCCCGAAAACCCGACTTTGATGCCTATATCGACCCACAGAAGCAATATGCAGATGCAGTGATTGAAGTGTTGCCAACAAATTTGATACCAGATGATAATGAAGGAAAAGTTTTGAGAGTAAGGCTGATAATGAAGGAAGGGGTGGAATTTTTTGACCCAGTTTATTTGTTTGATGAAGGCTCTTCAATTTCATGGATTCCTTGTGGAAGAAAGCTCACTTGCTCTTACCCTGGGATCAAATTCTCCTATGGCCCTGAAACTTATTATGGCAATGAGGTATCGGTGCTGGAAATGGACGGGCAATTCGACAGGCTCGACGAGCTCATCTACGTCGAAAGCCATCTCAGCAACTTGTCGACAAAATTCTACGGCGAAGTGACTCAACAGATGCTGAAGCACGCAGACTTCCCTGGAAGCAACAATGGCACAGGCTTCTTCCAAACCGTAGTCGGGTTGAAGATCAGAGATCTGTTCGAGCAGATCTCAGCCAGTAAGGCCAACTCGCCGGTCGCCGCCAAAGCTCGAAGTTAG 1233 46.31 MAVCIVYTTQALNSTFSSSTTKSHLGFHQKHQLVFLSSSNGKKCDSKATSRYVITCSAGEQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYDQVKAIKNGVAVDKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTNLIPDDNEGKVLRVRLIMKEGVEFFDPVYLFDEGSSISWIPCGRKLTCSYPGIKFSYGPETYYGNEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGFFQTVVGLKIRDLFEQISASKANSPVAAKARS 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70273663 70281087 + Sed0013554.1 Sed01g4150 703454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4150 410 ProSitePatterns Phosphoribulokinase signature. 214 227 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Sed01g4150 410 CDD PRK 65 354 - -
Sed01g4150 410 PRINTS Phosphoribulokinase family signature 214 231 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Sed01g4150 410 PRINTS Phosphoribulokinase family signature 179 197 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Sed01g4150 410 PRINTS Phosphoribulokinase family signature 232 255 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Sed01g4150 410 PRINTS Phosphoribulokinase family signature 70 87 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Sed01g4150 410 Gene3D - 60 297 IPR027417 -
Sed01g4150 410 FunFam Phosphoribulokinase 60 290 - -
Sed01g4150 410 Pfam Phosphoribulokinase / Uridine kinase family 65 263 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Sed01g4150 410 PANTHER URIDINE KINASE 61 344 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Sed01g4150 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 334 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4150 K00855 - - csv:101220055 743.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4150 Sed-Chr1:70273663 Sed05g0247 Sed-Chr5:1459872 6.40E-215 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g779 . . . . . . Bma07g00905 . . Cmo16g01248 Cma02g01644 . Car02g01402 . . . Cpe05g00149 . . . . . . . . . . . . . . . . . . Lsi07g01150 . . Cme06g02430 Blo03g00891 . Bda07g00068 . . Bpe11g00307 . . Sed01g4150 Cmo02g01690 Cmo19g00223 . Cma16g01201 . Car16g01131 . Cpe15g00181 Bhi05g00425 Tan07g2037 Cmetu06g0105 Lac11g2460 Hepe06g0978 . Lcy12g1984 . . . . . . . . Csa03g00122 Chy06g02183 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002153 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 64