Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4152 ATGGCACCGTCCCTCAACGATCACTCCATCTTTCAAACAGTAGAAAATCAAACTGTCCAAACTAAAAACCCCAACAAATATCCTGACTGGTATTCACCAGATACAGGAATTTATCACAGCCTTCATTGTTCCACAGATTTGCCCACTGATCCATTTCTTGATGTTGTTTCTTTCATCTTTTCCTTCAAACACAATGGCCATTCAGCCTTAATTGATTCCTCAACTGGGTATTCAATTTCTTACACAGAGCTCTTCCCAATGGTCAAATCCATGGCTTATAGCCTCCACAAATTGGGCATTTCACAGGGAGATGTAGTTTTGCTTCTGTTGCCAAATTCCATTTTTTACCCAATCATTCTATTGGGTATTCTCTATTTGGGAGCAGTTTTTACTCCCATGATTCATCAAAGCAGTTCTTCAGAAATCAAGAAACGAGTTCATGATTGCAATGTTTGTTTGGCTTTTGCAATCCCACGGAAAGTTAGGGATTTTAAAGCATTGGGAATTCGGGCAATATCTGTCCCAGAAAATGTGAATTTGATCCATTCTTCTTTTCATGAGCTTATTTCTGGTGGTTTTGATTTGATTACAAGACCTGTGATTAAACAGCAAGATACAGCTGCTATATTGTATTCTTCAGGTACTGCTGGAGTGAGCAAAGGGGTTATGTTGTCACATGGAAATTTCATTTCTATGGTTGAGCTTTTTGTTCGATTTGAAGCTTCACAATATGAATATTTGGCTACGGAGAATGTGTATTTAGCTGCTGTGCCAATGTTTCATGTTTATGGTCTATCCCTTTTTGTGATGGGGCTGTTATCTTTGGGTTCTAGTGTTGTTGTGATGAGCAAATTTGATGCCAATGAGGTGGTTAATGCCATTGATAGATTTAAAGTTACACATTTTCCAGTTGTTCCACCAATATTGACAGCTCTGGTTAAGATTGCTGAGAAAGTTGGTAGACATAGATTTGAGAGTTTGAAACAAGTTTCTTGTGGGGCTGCTTCTTTGAGCAAGAAGATTATAGAGGACTTTGTGCATGCTTTCCCTCATGCTGACTTCATTCAGGGATATGGCATGACTGAGTCCACAGCTATAGGAGCGCGTGGCTTCAACACCAAAAGGACTCAAAATTATACATCAGTAGGACTTTTAGCTCCAAACATGGAAGCTAAAGTAGTTGATTGTGTAACCGGATCGTGCATGCCTCCTGGTAAAACTGGTGAACTTTGGCTACGCGGACCTGGTTCAATGAAAGGGTACTTGAACAATCCAGAGGCAACAATGTCCACAATAGACCAAGAAGATTGGTTACATACTGGAGACATCGTTTACTTTGACCAAGATGGATACTTGTATGTTGTTGATCGTTTGAAGGACGTTATAAAGTATAAAGGCTTTCAGATTGCTCCTACTGATTTAGAAGATGTGGTGATCACACATCCAGAAGTTCTCGAAGTTGCAGTAGCAGCGGCCATTGATGAAGAATGTGGGGAGATTCCAGTGGCATTTGTCATCAAGAAGCCAGGAAGCAGACTCTCACAAAAAGATGTTATAGAGTTTGTTGCTCAACAGGTTGCACCCTATAAAAAGGTCAGAAAAGTAGTATTTACAGAATCAATACCTAAATCTGCTGCTGGCAAAGTACTGCGCAGGGAACTGGGGAGGCACTTGGCTTCTAGAATTTGA 1689 40.26 MAPSLNDHSIFQTVENQTVQTKNPNKYPDWYSPDTGIYHSLHCSTDLPTDPFLDVVSFIFSFKHNGHSALIDSSTGYSISYTELFPMVKSMAYSLHKLGISQGDVVLLLLPNSIFYPIILLGILYLGAVFTPMIHQSSSSEIKKRVHDCNVCLAFAIPRKVRDFKALGIRAISVPENVNLIHSSFHELISGGFDLITRPVIKQQDTAAILYSSGTAGVSKGVMLSHGNFISMVELFVRFEASQYEYLATENVYLAAVPMFHVYGLSLFVMGLLSLGSSVVVMSKFDANEVVNAIDRFKVTHFPVVPPILTALVKIAEKVGRHRFESLKQVSCGAASLSKKIIEDFVHAFPHADFIQGYGMTESTAIGARGFNTKRTQNYTSVGLLAPNMEAKVVDCVTGSCMPPGKTGELWLRGPGSMKGYLNNPEATMSTIDQEDWLHTGDIVYFDQDGYLYVVDRLKDVIKYKGFQIAPTDLEDVVITHPEVLEVAVAAAIDEECGEIPVAFVIKKPGSRLSQKDVIEFVAQQVAPYKKVRKVVFTESIPKSAAGKVLRRELGRHLASRI 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70288804 70294496 - Sed0014318.1 Sed01g4152 703456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4152 562 Gene3D - 38 459 IPR042099 -
Sed01g4152 562 CDD 4CL 47 554 - -
Sed01g4152 562 Pfam AMP-binding enzyme 64 422 IPR000873 -
Sed01g4152 562 Gene3D - 460 560 IPR045851 -
Sed01g4152 562 SUPERFAMILY Acetyl-CoA synthetase-like 62 559 - -
Sed01g4152 562 FunFam 4-coumarate--CoA ligase 2 460 561 - -
Sed01g4152 562 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 31 554 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
Sed01g4152 562 Pfam AMP-binding enzyme C-terminal domain 474 548 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4152 Sed-Chr1:70288804 Sed05g0244 Sed-Chr5:1441100 2.50E-254 dispersed
Sed01g4152 Sed-Chr1:70288804 Sed01g4153 Sed-Chr1:70288804 7.10E-273 tandem
Sed06g2012 Sed-Chr6:44240688 Sed01g4152 Sed-Chr1:70288804 5.10E-114 transposed
Sed01g4152 Sed-Chr1:70288804 Sed05g0243 Sed-Chr5:1441098 5.30E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4152 K01904 - csv:101219578 837.41