Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4153 ATGGCACCGTCCCTCAACGATCACTCCATCTTTCAAACAGTAGAAAATCAAACTGTCCAAACTAAAAACCCCAACAAATATCCTGACTGGTATTCACCAGATACAGGAATTTATCACAGCCTTCATTGTTCCACAGATTTGCCCACTGATCCATTTCTTGATGTTGTTTCTTTCATCTTTTCCTTCAAACACAATGGCCATTCAGCCTTAATTGATTCCTCAACTGGGTATTCAATTTCTTACACAGAGCTCTTCCCAATGGTCAAATCCATGGCTTATAGCCTCCACAAATTGGGCATTTCACAGGGAGATGTAGTTTTGCTTCTGTTGCCAAATTCCATTTTTTACCCAATCATTCTATTGGGTATTCTCTATTTGGGAGCAGTTTTTACTCCCATGATTCATCAAAGCAGTTCTTCAGAAATCAAGAAACGAGTTCATGATTGCAATGTTTGTTTGGCTTTTGCAATCCCACGGAAAGTTAGGGATTTTAAAGCATTGGGAATTCGGGCAATATCTGTCCCAGAAAATGTGAATTTGATCCATTCTTCTTTTCATGAGCTTATTTCTGGTGGTTTTGATTTGATTACAAGACCTGTGATTAAACAGCAAGATACAGCTGCTATATTGTATTCTTCAGGTACTGCTGGAGTGAGCAAAGGGGTTATGTTGTCACATGGAAATTTCATTTCTATGGTTGAGCTTTTTGTTCGATTTGAAGCTTCACAATATGAATATTTGGCTACGGAGAATGTGTATTTAGCTGCTGTGCCAATGTTTCATGTTTATGGTCTATCCCTTTTTGTGATGGGGCTGTTATCTTTGGGTTCTAGTGTTGTTGTGATGAGCAAATTTGATGCCAATGAGGTGGTTAATGCCATTGATAGATTTAAAGTTACACATTTTCCAGTTGTTCCACCAATATTGACAGCTCTGGTTAAGATTGCTGAGAAAGTTGGTAGACATAGATTTGAGAGTTTGAAACAAGTTTCTTGTGGGGCTGCTTCTTTGAGCAAGAAGATTATAGAGGACTTTGTGCATGCTTTCCCTCATGCTGACTTCATTCAGGGATATGGCATGACTGAGTCCACAGCTATAGGAGCGCGTGGCTTCAACACCAAAAGGACTCAAAATTATACATCAGTAGGACTTTTAGCTCCAAACATGGAAGCTAAAGTAGTTGATTGTGTAACCGGATCGTGCATGCCTCCTGGTAAAACTGGTGAACTTTGGCTACGCGGACCTGGTTCAATGAAAGGGTACTTGAACAATCCAGAGGCAACAATGTCCACAATAGACCAAGAAGATTGGTTACATACTGGAGACATCGTTTACTTTGACCAAGATGGATACTTGTATGTTGTTGATCGTTTGAAGGACGTTATAAAGTATAAAGGCTTTCAGGTACATATTAATTATCCGATAAAAAACCACTAA 1437 39.25 MAPSLNDHSIFQTVENQTVQTKNPNKYPDWYSPDTGIYHSLHCSTDLPTDPFLDVVSFIFSFKHNGHSALIDSSTGYSISYTELFPMVKSMAYSLHKLGISQGDVVLLLLPNSIFYPIILLGILYLGAVFTPMIHQSSSSEIKKRVHDCNVCLAFAIPRKVRDFKALGIRAISVPENVNLIHSSFHELISGGFDLITRPVIKQQDTAAILYSSGTAGVSKGVMLSHGNFISMVELFVRFEASQYEYLATENVYLAAVPMFHVYGLSLFVMGLLSLGSSVVVMSKFDANEVVNAIDRFKVTHFPVVPPILTALVKIAEKVGRHRFESLKQVSCGAASLSKKIIEDFVHAFPHADFIQGYGMTESTAIGARGFNTKRTQNYTSVGLLAPNMEAKVVDCVTGSCMPPGKTGELWLRGPGSMKGYLNNPEATMSTIDQEDWLHTGDIVYFDQDGYLYVVDRLKDVIKYKGFQVHINYPIKNH 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70288804 70294496 - Sed0014318.2 Sed01g4153 703457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4153 478 Gene3D - 38 460 IPR042099 -
Sed01g4153 478 SUPERFAMILY Acetyl-CoA synthetase-like 62 470 - -
Sed01g4153 478 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 31 469 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
Sed01g4153 478 Pfam AMP-binding enzyme 64 422 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4153 Sed-Chr1:70288804 Sed05g0243 Sed-Chr5:1441098 1.00E-208 dispersed
Sed01g4152 Sed-Chr1:70288804 Sed01g4153 Sed-Chr1:70288804 7.10E-273 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4153 K01904 - csv:101219578 688.723