Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4161 ATGGGGGAGTTGAAGAAGGAGCTGCAGAGGCTCATCGCCGCCATGATCGACGGCGATAGCTTCTCCACCGACGCCATCGATCACGCTAAAGAGATCCTTTCTGCGCTCAAGGAGTTGAAGCTCAGGAACAGATCGCGATCTTCGAATCTCTACGAGAATCTCATCTCGCCTCATGAATTTCGTTGTCCGCTCTCCAGAGAGCTCATGAGAGATCCTGTCGTTGTTTCCACTGGCGAGACATACGACAGACCCTTCATTCACCAATGGTTAAAATCAGGAAACCGAACATGCCCGAAAACTCAGCAAGTTCTTTCACACACAAACCTTACTCCCAATCACTTGATTCGTGAAATGATATCTCAGTGGTGTACAAGTCGGGGAATTGAGTTGCAAGATCGTGTCCACTGTCTCGATGATGATGTAATAACGGAAGCTGATAGAGACCGTTTTCTTACGTTAATAGAGAAAATGTCTTCGACTATATCTGAGCAAAAAGCTGCTGCTAAGGAGCTTCGGATGTTGACGAAGCGGGTGCCATCATTTCGAGTACTGTTTGGCGAGTCCCTTGATGCCATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCTCGAAGTAGTATTCATGGGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATCTGTCAATACATGACAACAACAAGAAACTTGTTGCTGAAACACCCAAGGTAGTACCTCTTCTAATGGAAGCGCTGAGATCGGGAACAATGGAAACAAGGAGCAATGCAGCTGCCGCCCTTTTTACTTTGTCAGCTCTCGACTCGAACAAAGCTCTCATCGGGAAAGCCGGTGCCCTGAAACCACTTATTGATCTTTTAGATGAGGGGCATCCCTTATCTATCAAAGATGCTGCTTCAGCAATATTTAATCTTTGTATACTTCACGAAAATAAAGGAAAAGCTGTACGAGATGGTGCGGTTCAAGTGCTTCTGAAAAAGATCATGAATCAAATGCACGTAGATGAGTTGTTGGCTATTTTGGCAATGCTTTCAAACCATCCTACAGCTGTCAAGGAAATGGGAGAACTTGGAGCTGTTCCTTTCTTGCTCAGAATTATCAGGGAAAGTGCCTGTTCTCGTAACAAGGAGAATTGCATTGTGATCATCCATTCTATATGCTTATATGATCGAACCAAGTGGAAAGACATTAGGGAGGAGGAGAAATGCTATCGAACTATCTCCGAACTTGCTCAGAATGGGACTTCAAGAGCCAAGAGAAAGGCCGGCGACATACTCGAGAAGCTGAACAGGGTAGTCAATATGATCCATACTGCATAA 1323 44.97 MGELKKELQRLIAAMIDGDSFSTDAIDHAKEILSALKELKLRNRSRSSNLYENLISPHEFRCPLSRELMRDPVVVSTGETYDRPFIHQWLKSGNRTCPKTQQVLSHTNLTPNHLIREMISQWCTSRGIELQDRVHCLDDDVITEADRDRFLTLIEKMSSTISEQKAAAKELRMLTKRVPSFRVLFGESLDAISLLLSPLCGDKSRSSIHGDLQEDVITTLLNLSIHDNNKKLVAETPKVVPLLMEALRSGTMETRSNAAAALFTLSALDSNKALIGKAGALKPLIDLLDEGHPLSIKDAASAIFNLCILHENKGKAVRDGAVQVLLKKIMNQMHVDELLAILAMLSNHPTAVKEMGELGAVPFLLRIIRESACSRNKENCIVIIHSICLYDRTKWKDIREEEKCYRTISELAQNGTSRAKRKAGDILEKLNRVVNMIHTA 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70369856 70373637 - Sed0017101.1 Sed01g4161 703465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4161 440 CDD RING-Ubox_PUB 57 109 IPR045210 -
Sed01g4161 440 Pfam Armadillo/beta-catenin-like repeat 270 307 IPR000225 GO:0005515(InterPro)
Sed01g4161 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 129 IPR013083 -
Sed01g4161 440 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g4161 440 PANTHER U BOX DOMAIN-CONTAINING 21 431 - -
Sed01g4161 440 FunFam RING-type E3 ubiquitin transferase 55 129 - -
Sed01g4161 440 FunFam RING-type E3 ubiquitin transferase 140 436 - -
Sed01g4161 440 Pfam U-box domain 57 126 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g4161 440 SUPERFAMILY ARM repeat 159 430 IPR016024 -
Sed01g4161 440 SMART arm_5 348 389 IPR000225 GO:0005515(InterPro)
Sed01g4161 440 SMART arm_5 268 308 IPR000225 GO:0005515(InterPro)
Sed01g4161 440 SMART arm_5 226 267 IPR000225 GO:0005515(InterPro)
Sed01g4161 440 SMART Ubox_2 59 122 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g4161 440 SUPERFAMILY RING/U-box 57 132 - -
Sed01g4161 440 Gene3D - 149 436 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4161 Sed-Chr1:70369856 Sed08g2733 Sed-Chr8:39121108 3.20E-39 dispersed
Sed01g4161 Sed-Chr1:70369856 Sed01g4162 Sed-Chr1:70369856 6.70E-162 tandem
Sed11g0693 Sed-Chr11:9634540 Sed01g4161 Sed-Chr1:70369856 1.70E-80 transposed
Sed01g4161 Sed-Chr1:70369856 Sed05g0213 Sed-Chr5:1295405 1.40E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4161 K27971 - csv:101215688 736.102