Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4162 ATGATATCTCAGTGGTGTACAAGTCGGGGAATTGAGTTGCAAGATCGTGTCCACTGTCTCGATGATGATGTAATAACGGAAGCTGATAGAGACCGTTTTCTTACGTTAATAGAGAAAATGTCTTCGACTATATCTGAGCAAAAAGCTGCTGCTAAGGAGCTTCGGATGTTGACGAAGCGGGTGCCATCATTTCGAGTACTGTTTGGCGAGTCCCTTGATGCCATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCTCGAAGTAGTATTCATGGGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATCTGTCAATACATGACAACAACAAGAAACTTGTTGCTGAAACACCCAAGGTAGTACCTCTTCTAATGGAAGCGCTGAGATCGGGAACAATGGAAACAAGGAGCAATGCAGCTGCCGCCCTTTTTACTTTGTCAGCTCTCGACTCGAACAAAGCTCTCATCGGGAAAGCCGGTGCCCTGAAACCACTTATTGATCTTTTAGATGAGGGGCATCCCTTATCTATCAAAGATGCTGCTTCAGCAATATTTAATCTTTGTATACTTCACGAAAATAAAGGAAAAGCTGTACGAGATGGTGCGGTTCAAGTGCTTCTGAAAAAGATCATGAATCAAATGCACGTAGATGAGTTGTTGGCTATTTTGGCAATGCTTTCAAACCATCCTACAGCTGTCAAGGAAATGGGAGAACTTGGAGCTGTTCCTTTCTTGCTCAGAATTATCAGGGAAAGTGCCTGTTCTCGTAACAAGGAGAATTGCATTGTGATCATCCATTCTATATGCTTATATGATCGAACCAAGTGGAAAGACATTAGGGAGGAGGAGAAATGCTATCGAACTATCTCCGAACTTGCTCAGAATGGGACTTCAAGAGCCAAGAGAAAGGCCGGCGACATACTCGAGAAGCTGAACAGGGTAGTCAATATGATCCATACTGCATAA 972 43.31 MISQWCTSRGIELQDRVHCLDDDVITEADRDRFLTLIEKMSSTISEQKAAAKELRMLTKRVPSFRVLFGESLDAISLLLSPLCGDKSRSSIHGDLQEDVITTLLNLSIHDNNKKLVAETPKVVPLLMEALRSGTMETRSNAAAALFTLSALDSNKALIGKAGALKPLIDLLDEGHPLSIKDAASAIFNLCILHENKGKAVRDGAVQVLLKKIMNQMHVDELLAILAMLSNHPTAVKEMGELGAVPFLLRIIRESACSRNKENCIVIIHSICLYDRTKWKDIREEEKCYRTISELAQNGTSRAKRKAGDILEKLNRVVNMIHTA 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70369856 70373637 - Sed0017101.2 Sed01g4162 703466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4162 323 Gene3D - 32 319 IPR011989 -
Sed01g4162 323 FunFam RING-type E3 ubiquitin transferase 23 319 - -
Sed01g4162 323 Pfam Armadillo/beta-catenin-like repeat 153 190 IPR000225 GO:0005515(InterPro)
Sed01g4162 323 SMART arm_5 151 191 IPR000225 GO:0005515(InterPro)
Sed01g4162 323 SMART arm_5 109 150 IPR000225 GO:0005515(InterPro)
Sed01g4162 323 SMART arm_5 231 272 IPR000225 GO:0005515(InterPro)
Sed01g4162 323 SUPERFAMILY ARM repeat 43 313 IPR016024 -
Sed01g4162 323 PANTHER U BOX DOMAIN-CONTAINING 1 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4162 Sed-Chr1:70369856 Sed05g0213 Sed-Chr5:1295405 2.20E-133 dispersed
Sed01g4161 Sed-Chr1:70369856 Sed01g4162 Sed-Chr1:70369856 6.70E-162 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4162 K27971 - csv:101215688 551.592