Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4182 ATGTTTGATTCCATTTTCCTTTTCTTCTTCATTGCTCTCTTCAATCCCTGCAATTCTTCCCGATTCTCAGCCGGTGATCGGCGATTGCTCCACCAGCCCTTTTTCCCACTTGATCCCGTGCCTCCGGCGGAGCCGCCGTCCCCTCCGCCGCCCCCACCGCCGAATCCCAAGTACCCATTTTCCACCACCCCTCCTACAACCCCTGACGGATCTCCATTCTTCCCGACGTTCCCTGGAACCCCGCCTCCGCCGTCTCCGGCGAGCTTCGCTTCTTTTCCGGCGAATATCTCTTCTCTGATTCTCCCCACTTCGTCTCAGTCCGGTTCCAGTTCCAAGAAGGCTGTTCCGTTGGCCATTGCTGCGGTTGTTTCCGCTGTTTTGGTTGTCTGCGTTGCTGGGTTTTTGTATTGCCGGCGGCGGAGGCAGCGGCAGCGGCGGTTGAGGGATGATAAGACGCTCAGATCTGAAAACAGTAGCCGGTTGTGTCCGGTTGTTCCGAGTGTTGAAATCGGAAATGGAATCCCTAAGTTGAGACATCCTTCTGGAAATAGTTCGGAGTTTCTGTATTTGGGTACTCTCGTCGGCGGAGCTCGTGTGGCTGATCCTAGGCCGTTGGATTCGCCGGAGCTTCATCCGCTTCCGCCGTTGGATTTCGGCCGGTCGATTGAGAAGCCCAATGGCGGAAATGGAGAGGAGAGATCGATGGGGGATGAAGAGGAAGAGGAATTTTACTCTCCTAAAGGTTCTATCGGCGTTAATGGCTCCGGATCTCGAAGATTGCTCGCAACAATGGCGGCTGAGAATTTGCTCGGAAAAACCAGCGATTCGAGCTCGACTTCGTATTCCACATCCAGCGGTTCCGTTTCTCCGGCGAGATCGCGGTCGCAAAGTCTCTCTCTATCTCCTCCGGCGAGCTTGAGCCCTAGAAGATCCGTTCAAAACGACTCTGCTCATTTCTCTGTTTCTGCCACTATAGCGACGGAGCAGAATTCGCCGCCATTAACGCCGCCGCTTTCCCACGGCGGAGCAGAATCGGACGGCGGCGGAAAATCCCATTTCCCTTCTCCGATGCGTTTATCGACGGCGAAGCTTCCGGAGAAATGCTCCACCGCATCTTCTTCCCGGAGATTCTCTAATGTTTCAGTTCACAGTGAAAAGGATTTGGTTAATCAACAAGAATCTCCAATTGCAGATGAAATTTTAGGGCAAATCCAGATTCAATTACCGACAGTTTTGGATTCTGATGCAAAATTTAAGCAAATTCCTTATTCATTTACTTCATCTTCATTCTCATCATCACCGGAGAGAGTAGTTTTGGACTCATCACCGGAGAGAATTCTGATGAGTGATTCAGATTCATCAAAGAGAACTTTCGATCATTATGAACAAGATGTTCAATCTTGTTCTGCTGATATCAATTCCACTGATGCGGGTCGACTTCAATCTCCCTCGGGTGCGTCGACAGCTCCTCCGCCACCACCGCCACCGCCGCCGCCCCCACCAGCAATAGCACTGCCACCCCTTCTTCCAGTACATAGGGAAAAGGAAAACCCCATTACAATGGCACCTCCTCCATTGGTGCCTCCATTGAAGCCGTTTATAATGGAGAATGTGAAAAATGTCTCACCAATTCAGTTTCCTTCTTGCAAAAGCAATGAGGAATCATTAGAAGACACTCCAAAGCCAAAGTTGAAGCCATTGCATTGGGATAAAGTGAGGGCCAGCTCTGATCGTGAGATGGTGTGGGATCAGCTCAGATCAAGCTCTTTTAAAGTGAACGAAGAAAGGATTGAAACTCTGTTTGTTGTGAACACTTCCAACTCGAAGGAGACAACTCCACGCCCTGTGCTTCCTACACCTAACCAAGAGATTGGAGTTCTCGATCCCAAAAAGTCACAGAACATCGCGATCGCGCTACGGGCACTTAATGTGACCATAGATGAAGTTTGTGAAGCTCTTTTAGAAGGTAATGCCGATGCACTTGGAACGGATCTACTTGAAATCTTATTGAAGATGGCTCCAACAAAAGAAGAAGAACGAAAACTAAAGGCATCTAAGGATGTCTCACCTACCAAGTTTGGCCCTGCTGAGAGATTTTTGAAGGCAGTTCTTGATGTTCCTTTTGCATTTAAAAGGGTGGACGCAATGCTTTACATTGCAAATTTCGAGTCCGAGACTGAGTATCTAAAGAAATCGTTCGAAAATCTTGAGACTGCATGTGAAGAATTGAGGAATAGCAGGATGTTTTTGAAACTCCTGGATGCGGTGCTCAAGACCGGAAACCGTATGAATGTTGGCACCAACCGTGGCGATGCGCACGCCTTCAAACTTGACACACTTTTAAAACTTGTTGATGTCAAGGGTGCAGATGGAAAAACTACTCTCCTGCATTTTGTTGTACAAGAAATCACTAGAAGTGAAGGAGCTCGTCTTTGTAGCCCGAGTCAACCTCCGAATTCCAATCTCAATGACGATGTCAAATGCAGGAAACTCGGACTGCAAGTTGTTTCAGGCCTCAGCTCAGATCTCGCTAACGTAAGGAAAGCAGCATCAATGGATTTCGATGTTCTCAGTGGCGAGGTCATGAAGCTTTCGAGAGGACTAGACAACATCAGAGAGGCTCTACGTATAAACGAAGCAGACGGGACGAACGAAAGCACAGAAAAGTTCTCGGAGTCAATGAGCAGATTCTTGAAAACAGCAGAAGAAGAAATCATCAGAATCCAAGCTCATGAAAGTGTAGCATTATCATTAGTAAAGGAGATCACAGAGTACTTTCATGGCAACTCAGCAAAAGAAGAAGCTCATCCATTTAGAATTTTCATGGTGGTGAGAGATTTTCTAACAATCCTGGATGGAGTCTGCAAGGAAGTCGGGATGATAAACGAGCGGACGATCGTAAGTTCAGCCCATAAATTTCCAGTTCCAGTGAATCCAACACTGCCACAAGCATTTCAAACTCATCAAAGAATGCAGAAATACAATTCATCTGATGAAGAAAGTGAATAA 3009 47.69 MFDSIFLFFFIALFNPCNSSRFSAGDRRLLHQPFFPLDPVPPAEPPSPPPPPPPNPKYPFSTTPPTTPDGSPFFPTFPGTPPPPSPASFASFPANISSLILPTSSQSGSSSKKAVPLAIAAVVSAVLVVCVAGFLYCRRRRQRQRRLRDDKTLRSENSSRLCPVVPSVEIGNGIPKLRHPSGNSSEFLYLGTLVGGARVADPRPLDSPELHPLPPLDFGRSIEKPNGGNGEERSMGDEEEEEFYSPKGSIGVNGSGSRRLLATMAAENLLGKTSDSSSTSYSTSSGSVSPARSRSQSLSLSPPASLSPRRSVQNDSAHFSVSATIATEQNSPPLTPPLSHGGAESDGGGKSHFPSPMRLSTAKLPEKCSTASSSRRFSNVSVHSEKDLVNQQESPIADEILGQIQIQLPTVLDSDAKFKQIPYSFTSSSFSSSPERVVLDSSPERILMSDSDSSKRTFDHYEQDVQSCSADINSTDAGRLQSPSGASTAPPPPPPPPPPPPAIALPPLLPVHREKENPITMAPPPLVPPLKPFIMENVKNVSPIQFPSCKSNEESLEDTPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKVNEERIETLFVVNTSNSKETTPRPVLPTPNQEIGVLDPKKSQNIAIALRALNVTIDEVCEALLEGNADALGTDLLEILLKMAPTKEEERKLKASKDVSPTKFGPAERFLKAVLDVPFAFKRVDAMLYIANFESETEYLKKSFENLETACEELRNSRMFLKLLDAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEITRSEGARLCSPSQPPNSNLNDDVKCRKLGLQVVSGLSSDLANVRKAASMDFDVLSGEVMKLSRGLDNIREALRINEADGTNESTEKFSESMSRFLKTAEEEIIRIQAHESVALSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLTILDGVCKEVGMINERTIVSSAHKFPVPVNPTLPQAFQTHQRMQKYNSSDEESE 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70429283 70433794 - Sed0005388.1 Sed01g4182 703486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4182 1002 MobiDBLite consensus disorder prediction 472 507 - -
Sed01g4182 1002 Gene3D Formin, FH2 domain 559 972 IPR042201 -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 271 358 - -
Sed01g4182 1002 ProSiteProfiles Formin homology-2 (FH2) domain profile. 554 977 IPR015425 -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 271 336 - -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 486 507 - -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 200 255 - -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 429 458 - -
Sed01g4182 1002 SMART it6_source 554 966 IPR015425 -
Sed01g4182 1002 Pfam Formin Homology 2 Domain 557 951 IPR015425 -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 40 85 - -
Sed01g4182 1002 SUPERFAMILY Formin homology 2 domain (FH2 domain) 491 962 - -
Sed01g4182 1002 PANTHER FORMIN-RELATED 82 999 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4182 K28090 - - csv:101211678 1302.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4182 Sed-Chr1:70429283 Sed07g2651 Sed-Chr7:41953739 1.20E-94 dispersed
Sed01g0454 Sed-Chr1:3459637 Sed01g4182 Sed-Chr1:70429283 2.20E-138 transposed
Sed06g0275 Sed-Chr6:2340117 Sed01g4182 Sed-Chr1:70429283 1.60E-160 transposed
Sed01g4182 Sed-Chr1:70429283 Sed05g0219 Sed-Chr5:1332627 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g4182 . 523 983 FH2 protein (formin) Gene Family AT3G25500 73.7 1.6e-185 647.9
Sed05g0219 . 179 971 FH2 protein (formin) Gene Family AT3G25500 53.1 1.4e-184 644.8
Sed06g0275 . 447 929 FH2 protein (formin) Gene Family AT3G25500 64.8 1.1e-162 572.0
Sed01g0454 . 434 886 FH2 protein (formin) Gene Family AT3G25500 59.3 5.0e-139 493.4
Sed04g0464 . 493 893 FH2 protein (formin) Gene Family AT3G25500 51.1 2.0e-103 375.2
Sed04g0465 . 493 893 FH2 protein (formin) Gene Family AT3G25500 51.1 2.0e-103 375.2
Sed01g4182 . 547 1000 FH2 protein (formin) Gene Family AT2G43800 59.4 3.9e-140 496.9
Sed05g0219 . 534 988 FH2 protein (formin) Gene Family AT2G43800 59.0 2.6e-136 484.2
Sed01g0454 . 464 902 FH2 protein (formin) Gene Family AT2G43800 54.0 9.6e-123 439.1
Sed07g2651 . 444 588 FH2 protein (formin) Gene Family AT4G15200 66.7 5.8e-47 186.4
Sed04g3176 . 457 604 FH2 protein (formin) Gene Family AT4G15200 61.7 1.2e-44 178.7
Sed07g2651 . 205 924 FH2 protein (formin) Gene Family AT5G54650 55.2 3.4e-168 590.1
Sed04g3176 . 462 944 FH2 protein (formin) Gene Family AT5G54650 64.9 1.7e-167 587.8
Sed05g3088 . 560 1011 FH2 protein (formin) Gene Family AT5G54650 61.8 3.2e-150 530.4
Sed01g0454 . 25 905 FH2 protein (formin) Gene Family AT5G67470 55.8 5.0e-220 762.3
Sed01g4182 . 538 1000 FH2 protein (formin) Gene Family AT5G67470 59.3 1.3e-135 481.9
Sed05g0219 . 526 989 FH2 protein (formin) Gene Family AT5G67470 58.5 1.2e-133 475.3
Sed06g0275 . 478 906 FH2 protein (formin) Gene Family AT5G67470 63.3 7.4e-131 466.1
Sed04g0464 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.4 5.5e-102 370.2
Sed04g0465 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.4 5.5e-102 370.2
Sed06g1596 . 306 783 FH2 protein (formin) Gene Family AT1G59910 51.6 5.3e-124 443.4
Sed01g4182 . 578 959 FH2 protein (formin) Gene Family AT5G48360 51.6 5.9e-100 363.2
Sed01g0454 . 468 863 FH2 protein (formin) Gene Family AT3G05470 51.2 1.8e-105 381.7
Sed05g0223 . 924 1235 FH2 protein (formin) Gene Family AT1G42980 50.8 3.3e-67 253.1
Sed05g0223 . 1 1242 FH2 protein (formin) Gene Family AT1G31810 67.1 0.0e+00 1206.0
Sed08g0241 . 1344 1665 FH2 protein (formin) Gene Family AT5G07650 73.6 4.4e-127 453.4
Sed01g2329 . 979 1286 FH2 protein (formin) Gene Family AT5G07650 70.1 3.7e-118 423.7
Sed05g1741 . 967 1289 FH2 protein (formin) Gene Family AT5G07650 65.0 6.3e-110 396.4
Sed05g1740 . 1027 1349 FH2 protein (formin) Gene Family AT5G07650 65.0 6.3e-110 396.4
Sed13g1968 . 1050 1371 FH2 protein (formin) Gene Family AT5G07650 63.0 1.6e-108 391.7
Sed05g0223 . 908 1239 FH2 protein (formin) Gene Family AT5G07650 59.6 6.5e-107 386.3
Sed12g2294 . 807 1135 FH2 protein (formin) Gene Family AT5G07650 59.4 8.5e-107 386.0
Sed12g1975 . 1436 1691 FH2 protein (formin) Gene Family AT5G07650 72.7 6.1e-97 353.2
Sed12g1974 . 1436 1691 FH2 protein (formin) Gene Family AT5G07650 72.7 6.1e-97 353.2
Sed12g1976 . 1412 1667 FH2 protein (formin) Gene Family AT5G07650 72.7 6.1e-97 353.2
Sed05g1742 . 1027 1286 FH2 protein (formin) Gene Family AT5G07650 66.2 4.3e-90 330.5
Sed05g1743 . 1027 1175 FH2 protein (formin) Gene Family AT5G07650 67.8 2.1e-49 195.3
Sed08g0241 . 1270 1658 FH2 protein (formin) Gene Family AT5G07770 68.2 1.7e-139 494.2
Sed01g2329 . 903 1286 FH2 protein (formin) Gene Family AT5G07770 63.1 4.7e-126 449.5
Sed05g1741 . 892 1281 FH2 protein (formin) Gene Family AT5G07770 59.1 4.7e-118 422.9
Sed05g1740 . 952 1341 FH2 protein (formin) Gene Family AT5G07770 59.1 4.7e-118 422.9
Sed13g1968 . 975 1364 FH2 protein (formin) Gene Family AT5G07770 56.5 2.2e-115 414.1
Sed12g2294 . 739 1138 FH2 protein (formin) Gene Family AT5G07770 54.7 8.3e-115 412.1
Sed05g0223 . 833 1233 FH2 protein (formin) Gene Family AT5G07770 54.5 1.8e-114 411.0
Sed12g1975 . 1365 1691 FH2 protein (formin) Gene Family AT5G07770 67.4 1.0e-112 405.2
Sed12g1974 . 1365 1691 FH2 protein (formin) Gene Family AT5G07770 67.4 1.0e-112 405.2
Sed12g1976 . 1341 1667 FH2 protein (formin) Gene Family AT5G07770 67.4 1.0e-112 405.2
Sed05g1742 . 952 1287 FH2 protein (formin) Gene Family AT5G07770 58.8 3.4e-100 363.6
Sed05g1743 . 952 1175 FH2 protein (formin) Gene Family AT5G07770 56.4 2.4e-58 224.6
Sed05g1741 . 884 1289 FH2 protein (formin) Gene Family AT3G32400 74.6 4.6e-167 585.5
Sed05g1740 . 944 1349 FH2 protein (formin) Gene Family AT3G32400 74.6 4.6e-167 585.5
Sed13g1968 . 950 1371 FH2 protein (formin) Gene Family AT3G32400 71.1 3.4e-162 569.3
Sed12g2294 . 723 1127 FH2 protein (formin) Gene Family AT3G32400 65.8 4.5e-146 515.8
Sed05g1742 . 944 1286 FH2 protein (formin) Gene Family AT3G32400 74.3 5.7e-141 498.8
Sed05g0223 . 844 1238 FH2 protein (formin) Gene Family AT3G32400 65.7 1.1e-139 494.6
Sed08g0241 . 1259 1665 FH2 protein (formin) Gene Family AT3G32400 63.0 1.4e-139 494.2
Sed01g2329 . 873 1292 FH2 protein (formin) Gene Family AT3G32400 57.9 1.0e-129 461.5
Sed12g1975 . 1365 1691 FH2 protein (formin) Gene Family AT3G32400 61.3 4.5e-106 382.9
Sed12g1974 . 1365 1691 FH2 protein (formin) Gene Family AT3G32400 61.3 4.5e-106 382.9
Sed12g1976 . 1341 1667 FH2 protein (formin) Gene Family AT3G32400 61.3 4.5e-106 382.9
Sed05g1743 . 944 1175 FH2 protein (formin) Gene Family AT3G32400 72.0 1.8e-91 334.3
Sed05g1740 . 1 1349 FH2 protein (formin) Gene Family AT2G25050 50.6 0.0e+00 1135.9
Sed12g2294 . 1 1127 FH2 protein (formin) Gene Family AT2G25050 54.0 8.8e-294 1007.7
Sed08g0241 . 1271 1665 FH2 protein (formin) Gene Family AT5G07780 61.9 1.2e-121 434.5
Sed01g2329 . 903 1292 FH2 protein (formin) Gene Family AT5G07780 57.1 4.4e-111 399.4
Sed05g1741 . 893 1282 FH2 protein (formin) Gene Family AT5G07780 54.8 5.2e-104 375.9
Sed05g1740 . 953 1342 FH2 protein (formin) Gene Family AT5G07780 54.8 5.2e-104 375.9
Sed13g1968 . 977 1371 FH2 protein (formin) Gene Family AT5G07780 53.3 5.7e-103 372.5
Sed05g0223 . 845 1234 FH2 protein (formin) Gene Family AT5G07780 52.5 2.4e-101 367.1
Sed12g2294 . 746 1127 FH2 protein (formin) Gene Family AT5G07780 52.3 1.5e-98 357.8
Sed12g1975 . 1366 1673 FH2 protein (formin) Gene Family AT5G07780 60.9 5.2e-96 349.4
Sed12g1974 . 1366 1673 FH2 protein (formin) Gene Family AT5G07780 60.9 5.2e-96 349.4
Sed12g1976 . 1342 1649 FH2 protein (formin) Gene Family AT5G07780 60.9 5.2e-96 349.4
Sed05g1742 . 953 1283 FH2 protein (formin) Gene Family AT5G07780 54.3 2.8e-89 327.0
Sed08g0241 . 1 1666 FH2 protein (formin) Gene Family AT5G07740 57.3 1.3e-313 1073.9
Sed12g1975 . 1 1691 FH2 protein (formin) Gene Family AT5G07740 54.8 1.9e-273 940.6
Sed12g1974 . 1 1691 FH2 protein (formin) Gene Family AT5G07740 54.8 1.9e-273 940.6
Sed12g1976 . 1 1667 FH2 protein (formin) Gene Family AT5G07740 54.1 5.8e-259 892.5
Sed08g0241 . 1343 1665 FH2 protein (formin) Gene Family AT5G07760 73.8 4.5e-125 446.8
Sed01g2329 . 978 1292 FH2 protein (formin) Gene Family AT5G07760 69.0 6.5e-116 416.4
Sed05g1741 . 951 1295 FH2 protein (formin) Gene Family AT5G07760 64.0 1.8e-110 398.3
Sed05g1740 . 1011 1355 FH2 protein (formin) Gene Family AT5G07760 64.0 1.8e-110 398.3
Sed12g2294 . 815 1135 FH2 protein (formin) Gene Family AT5G07760 62.5 5.0e-108 390.2
Sed13g1968 . 1049 1371 FH2 protein (formin) Gene Family AT5G07760 63.6 1.9e-107 388.3
Sed05g0223 . 918 1239 FH2 protein (formin) Gene Family AT5G07760 60.4 8.8e-105 379.4
Sed12g1975 . 1435 1691 FH2 protein (formin) Gene Family AT5G07760 72.4 5.2e-97 353.6
Sed12g1974 . 1435 1691 FH2 protein (formin) Gene Family AT5G07760 72.4 5.2e-97 353.6
Sed12g1976 . 1411 1667 FH2 protein (formin) Gene Family AT5G07760 72.4 5.2e-97 353.6
Sed05g1742 . 1011 1286 FH2 protein (formin) Gene Family AT5G07760 65.2 1.5e-91 335.5
Sed05g1743 . 1011 1175 FH2 protein (formin) Gene Family AT5G07760 67.3 1.9e-51 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010763 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 32