Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4182 ATGTTTGATTCCATTTTCCTTTTCTTCTTCATTGCTCTCTTCAATCCCTGCAATTCTTCCCGATTCTCAGCCGGTGATCGGCGATTGCTCCACCAGCCCTTTTTCCCACTTGATCCCGTGCCTCCGGCGGAGCCGCCGTCCCCTCCGCCGCCCCCACCGCCGAATCCCAAGTACCCATTTTCCACCACCCCTCCTACAACCCCTGACGGATCTCCATTCTTCCCGACGTTCCCTGGAACCCCGCCTCCGCCGTCTCCGGCGAGCTTCGCTTCTTTTCCGGCGAATATCTCTTCTCTGATTCTCCCCACTTCGTCTCAGTCCGGTTCCAGTTCCAAGAAGGCTGTTCCGTTGGCCATTGCTGCGGTTGTTTCCGCTGTTTTGGTTGTCTGCGTTGCTGGGTTTTTGTATTGCCGGCGGCGGAGGCAGCGGCAGCGGCGGTTGAGGGATGATAAGACGCTCAGATCTGAAAACAGTAGCCGGTTGTGTCCGGTTGTTCCGAGTGTTGAAATCGGAAATGGAATCCCTAAGTTGAGACATCCTTCTGGAAATAGTTCGGAGTTTCTGTATTTGGGTACTCTCGTCGGCGGAGCTCGTGTGGCTGATCCTAGGCCGTTGGATTCGCCGGAGCTTCATCCGCTTCCGCCGTTGGATTTCGGCCGGTCGATTGAGAAGCCCAATGGCGGAAATGGAGAGGAGAGATCGATGGGGGATGAAGAGGAAGAGGAATTTTACTCTCCTAAAGGTTCTATCGGCGTTAATGGCTCCGGATCTCGAAGATTGCTCGCAACAATGGCGGCTGAGAATTTGCTCGGAAAAACCAGCGATTCGAGCTCGACTTCGTATTCCACATCCAGCGGTTCCGTTTCTCCGGCGAGATCGCGGTCGCAAAGTCTCTCTCTATCTCCTCCGGCGAGCTTGAGCCCTAGAAGATCCGTTCAAAACGACTCTGCTCATTTCTCTGTTTCTGCCACTATAGCGACGGAGCAGAATTCGCCGCCATTAACGCCGCCGCTTTCCCACGGCGGAGCAGAATCGGACGGCGGCGGAAAATCCCATTTCCCTTCTCCGATGCGTTTATCGACGGCGAAGCTTCCGGAGAAATGCTCCACCGCATCTTCTTCCCGGAGATTCTCTAATGTTTCAGTTCACAGTGAAAAGGATTTGGTTAATCAACAAGAATCTCCAATTGCAGATGAAATTTTAGGGCAAATCCAGATTCAATTACCGACAGTTTTGGATTCTGATGCAAAATTTAAGCAAATTCCTTATTCATTTACTTCATCTTCATTCTCATCATCACCGGAGAGAGTAGTTTTGGACTCATCACCGGAGAGAATTCTGATGAGTGATTCAGATTCATCAAAGAGAACTTTCGATCATTATGAACAAGATGTTCAATCTTGTTCTGCTGATATCAATTCCACTGATGCGGGTCGACTTCAATCTCCCTCGGGTGCGTCGACAGCTCCTCCGCCACCACCGCCACCGCCGCCGCCCCCACCAGCAATAGCACTGCCACCCCTTCTTCCAGTACATAGGGAAAAGGAAAACCCCATTACAATGGCACCTCCTCCATTGGTGCCTCCATTGAAGCCGTTTATAATGGAGAATGTGAAAAATGTCTCACCAATTCAGTTTCCTTCTTGCAAAAGCAATGAGGAATCATTAGAAGACACTCCAAAGCCAAAGTTGAAGCCATTGCATTGGGATAAAGTGAGGGCCAGCTCTGATCGTGAGATGGTGTGGGATCAGCTCAGATCAAGCTCTTTTAAAGTGAACGAAGAAAGGATTGAAACTCTGTTTGTTGTGAACACTTCCAACTCGAAGGAGACAACTCCACGCCCTGTGCTTCCTACACCTAACCAAGAGATTGGAGTTCTCGATCCCAAAAAGTCACAGAACATCGCGATCGCGCTACGGGCACTTAATGTGACCATAGATGAAGTTTGTGAAGCTCTTTTAGAAGGTAATGCCGATGCACTTGGAACGGATCTACTTGAAATCTTATTGAAGATGGCTCCAACAAAAGAAGAAGAACGAAAACTAAAGGCATCTAAGGATGTCTCACCTACCAAGTTTGGCCCTGCTGAGAGATTTTTGAAGGCAGTTCTTGATGTTCCTTTTGCATTTAAAAGGGTGGACGCAATGCTTTACATTGCAAATTTCGAGTCCGAGACTGAGTATCTAAAGAAATCGTTCGAAAATCTTGAGACTGCATGTGAAGAATTGAGGAATAGCAGGATGTTTTTGAAACTCCTGGATGCGGTGCTCAAGACCGGAAACCGTATGAATGTTGGCACCAACCGTGGCGATGCGCACGCCTTCAAACTTGACACACTTTTAAAACTTGTTGATGTCAAGGGTGCAGATGGAAAAACTACTCTCCTGCATTTTGTTGTACAAGAAATCACTAGAAGTGAAGGAGCTCGTCTTTGTAGCCCGAGTCAACCTCCGAATTCCAATCTCAATGACGATGTCAAATGCAGGAAACTCGGACTGCAAGTTGTTTCAGGCCTCAGCTCAGATCTCGCTAACGTAAGGAAAGCAGCATCAATGGATTTCGATGTTCTCAGTGGCGAGGTCATGAAGCTTTCGAGAGGACTAGACAACATCAGAGAGGCTCTACGTATAAACGAAGCAGACGGGACGAACGAAAGCACAGAAAAGTTCTCGGAGTCAATGAGCAGATTCTTGAAAACAGCAGAAGAAGAAATCATCAGAATCCAAGCTCATGAAAGTGTAGCATTATCATTAGTAAAGGAGATCACAGAGTACTTTCATGGCAACTCAGCAAAAGAAGAAGCTCATCCATTTAGAATTTTCATGGTGGTGAGAGATTTTCTAACAATCCTGGATGGAGTCTGCAAGGAAGTCGGGATGATAAACGAGCGGACGATCGTAAGTTCAGCCCATAAATTTCCAGTTCCAGTGAATCCAACACTGCCACAAGCATTTCAAACTCATCAAAGAATGCAGAAATACAATTCATCTGATGAAGAAAGTGAATAA 3009 47.69 MFDSIFLFFFIALFNPCNSSRFSAGDRRLLHQPFFPLDPVPPAEPPSPPPPPPPNPKYPFSTTPPTTPDGSPFFPTFPGTPPPPSPASFASFPANISSLILPTSSQSGSSSKKAVPLAIAAVVSAVLVVCVAGFLYCRRRRQRQRRLRDDKTLRSENSSRLCPVVPSVEIGNGIPKLRHPSGNSSEFLYLGTLVGGARVADPRPLDSPELHPLPPLDFGRSIEKPNGGNGEERSMGDEEEEEFYSPKGSIGVNGSGSRRLLATMAAENLLGKTSDSSSTSYSTSSGSVSPARSRSQSLSLSPPASLSPRRSVQNDSAHFSVSATIATEQNSPPLTPPLSHGGAESDGGGKSHFPSPMRLSTAKLPEKCSTASSSRRFSNVSVHSEKDLVNQQESPIADEILGQIQIQLPTVLDSDAKFKQIPYSFTSSSFSSSPERVVLDSSPERILMSDSDSSKRTFDHYEQDVQSCSADINSTDAGRLQSPSGASTAPPPPPPPPPPPPAIALPPLLPVHREKENPITMAPPPLVPPLKPFIMENVKNVSPIQFPSCKSNEESLEDTPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKVNEERIETLFVVNTSNSKETTPRPVLPTPNQEIGVLDPKKSQNIAIALRALNVTIDEVCEALLEGNADALGTDLLEILLKMAPTKEEERKLKASKDVSPTKFGPAERFLKAVLDVPFAFKRVDAMLYIANFESETEYLKKSFENLETACEELRNSRMFLKLLDAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEITRSEGARLCSPSQPPNSNLNDDVKCRKLGLQVVSGLSSDLANVRKAASMDFDVLSGEVMKLSRGLDNIREALRINEADGTNESTEKFSESMSRFLKTAEEEIIRIQAHESVALSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLTILDGVCKEVGMINERTIVSSAHKFPVPVNPTLPQAFQTHQRMQKYNSSDEESE 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70429283 70433794 - Sed0005388.1 Sed01g4182 703486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4182 1002 MobiDBLite consensus disorder prediction 472 507 - -
Sed01g4182 1002 Gene3D Formin, FH2 domain 559 972 IPR042201 -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 271 358 - -
Sed01g4182 1002 ProSiteProfiles Formin homology-2 (FH2) domain profile. 554 977 IPR015425 -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 271 336 - -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 486 507 - -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 200 255 - -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 429 458 - -
Sed01g4182 1002 SMART it6_source 554 966 IPR015425 -
Sed01g4182 1002 Pfam Formin Homology 2 Domain 557 951 IPR015425 -
Sed01g4182 1002 MobiDBLite consensus disorder prediction 40 85 - -
Sed01g4182 1002 SUPERFAMILY Formin homology 2 domain (FH2 domain) 491 962 - -
Sed01g4182 1002 PANTHER FORMIN-RELATED 82 999 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4182 Sed-Chr1:70429283 Sed07g2651 Sed-Chr7:41953739 1.20E-94 dispersed
Sed01g0454 Sed-Chr1:3459637 Sed01g4182 Sed-Chr1:70429283 2.20E-138 transposed
Sed06g0275 Sed-Chr6:2340117 Sed01g4182 Sed-Chr1:70429283 1.60E-160 transposed
Sed01g4182 Sed-Chr1:70429283 Sed05g0219 Sed-Chr5:1332627 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4182 K28090 - csv:101211678 1302.35