Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4237 ATGGCGGTTTCTCTTACTCTTCACTCATTGCTCTTTCTTCTTCTCAACTTCCTCTTCCTTCATTCCAGTTTTTCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCATCAATGGCGGACTGGTATGTTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGCAATAGCACAGAGAGAAGAAACTTGGGGTTCTTCTCTTGCGGAACAGGAAATCCAATTGATGATTGTTGGCGCTGTGACACACGTTGGCAACTTCGCCGCAAGCACCTAGCAAATTGCGGCATCGGCTTCGGTCGCAATGCTGTCGGTGGCCGCGATGGGAAATACTATGTCGTGTCCGATCCCGGCGACGACGACCCCGTCAATCCCAGACCAGGAACCCTCCGCCACGCCGTGATTCAAGACAGGCCATTGTGGATCGTGTTCAAAAGAGACATGGTCATCACTCTAAAGCAAGAACTGATCATGAACAGCTTCAAGACAATCGATGCTCGTGGAGCCAATGTTCACATTGCTTATGGGGCTTGCATCACAATCCAATTCATAACCAATGTCATTATTCATGGTCTGCATATCCATGACTGTAAACCGACCGGTAACGCCATGGTTCGAAGCTCCCCGAGTCATTACGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATTTTCGGGTCGAGTCATATTTGGATTGATCACAACTCTCTTTCTAGCTGTGCTGATGGGCTCATTGATGCTGTCATGGGATCAACTGCCATTACAGTTTCTAACAACTACTTCACTCATCACAATGAGGTGATGCTTTTGGGGCATAGTGACTCTTACGTTCGAGACAAACAAATGCAAGTAACCATTGCTTACAACCATTTTGGTGAAGGTCTAATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATTGGTGGAAGTGCTGATCCCACAATTAATAGCCAAGGCAACAGATATCTTGCCCCTACCAACCCTTTTGCCAAAGAGGTCACAAAGCGAGTCGACACGTGGAACGGGGCGTGGAAGCAGTGGAATTGGAGATCGGAGGGCGATCTTTTGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCTTCAAGCTTGGGAGCTAAATCATCTTCATTGGTGGGCTCCATTACTTCAACTGCAGGTGCCCTTTCTTGTCGCAGGGGATACCGTTGTTAA 1290 46.98 MAVSLTLHSLLFLLLNFLFLHSSFSGDERLQSFNSSSMADWYVKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDTRWQLRRKHLANCGIGFGRNAVGGRDGKYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPTNPFAKEVTKRVDTWNGAWKQWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSTAGALSCRRGYRC 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70681923 70688095 - Sed0012459.1 Sed01g4237 703541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4237 429 Gene3D - 80 422 IPR012334 -
Sed01g4237 429 PRINTS Pollen allergen Amb family signature 371 395 IPR018082 -
Sed01g4237 429 PRINTS Pollen allergen Amb family signature 103 120 IPR018082 -
Sed01g4237 429 PRINTS Pollen allergen Amb family signature 400 423 IPR018082 -
Sed01g4237 429 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Sed01g4237 429 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Sed01g4237 429 PRINTS Pollen allergen Amb family signature 227 248 IPR018082 -
Sed01g4237 429 PRINTS Pollen allergen Amb family signature 163 179 IPR018082 -
Sed01g4237 429 PRINTS Pollen allergen Amb family signature 127 152 IPR018082 -
Sed01g4237 429 PANTHER PECTATE LYASE 18-RELATED 21 426 IPR045032 GO:0030570(InterPro)
Sed01g4237 429 FunFam Pectate lyase 80 422 - -
Sed01g4237 429 Pfam Pectate lyase 175 344 IPR002022 -
Sed01g4237 429 SUPERFAMILY Pectin lyase-like 58 424 IPR011050 -
Sed01g4237 429 SMART amb_all 155 352 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4237 Sed-Chr1:70681923 Sed09g0193 Sed-Chr9:1553900 3.70E-197 dispersed
Sed01g4237 Sed-Chr1:70681923 Sed12g0409 Sed-Chr12:2470045 7.00E-196 wgd
Sed01g4237 Sed-Chr1:70681923 Sed02g1468 Sed-Chr2:50689600 5.70E-198 wgd
Sed01g4237 Sed-Chr1:70681923 Sed04g2044 Sed-Chr4:34840872 3.50E-195 wgd
Sed01g4237 Sed-Chr1:70681923 Sed05g0178 Sed-Chr5:1087714 1.80E-228 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4237 K01728 - csv:101207204 814.683