Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4251 ATGCCTTTCTCGATTGCGCAGTCTCTTTTGGTTATTTATGCGTTCAATTTGCTATTCTCTTGCTCAGGGCAATCTTCAGCACGCATATACTTACCTCCTTCCTCACAGCCAAAACTGGAAACAACGATGACAGAAATGTCGACAGAACATGCAAGGTCAGAGTTGATGAGTTTTTCATTTGTGTCTTCAAAATTACATGGTAACTGGATGTTTAAGTCATCTTTGGGACCATCTACTGCTCCTGCACCTTCTCCAGGTCCTAGGAGTGCACCCTTACCTATCCGACATCATCGACAACGTCATATACGGCCTCATGTGGTTGCCCCTGCCCCATCAAAAGACCAAGGTTGTGATCAAATATGCATGGAGCCTCTTACTGCAGCTCCTTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTACTGGATATAGCTCCATATGCTGTTTTTCCTGTGATGAACGAGCTTGAAATCGAGATTGCAGAGGGAACTTACTTGGAGCAAAGCCAAGTGAAAATCATGGGTGCCACTGCAGATAGTCAAAATCAAGGAAGAACTATGGTGGATATAAATTTAGTACCTCTGGGAGAGAAGTTTGATAATACCACTGCAGTACTGACTTACAGAAGATTTTGGGATAAAAAAATGCATCTAAATATGACGCTTTTTGGTGATTATGAAGTTGTCTACATCAGCTATCCAGGGATTCCTTCTTCACCGCAATATGGAGGGTACATGGGAAGTGCTCCTAGTGGAAGTGCTGAAGATCTTCCCATTACTGCAAATTTCGTTAATAAGAGCAAGAAGATGAATATCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTATTGGTGTTCACTGGAGCCCTTTTTGTCTTTCTTAAATGGAGAAAGGTTGGCAGACCGTCTAGTGCGGTTGGCCCTGTCTTCACGCCGTCAATTAACAAAAGATCTGGTTTAGGATCAGCCTTATCAAGTAGCATTGCAAGCTCCACATCTGTTTCTCTAATTTCCACAATGCCAACCAGTATTCAGTCCGTTAAAACATTTTCACTTTCTGAACTTGAGATAGCAACTGATAAGTTTAGTTCCAAAAGGATTTTAGGCGAAGGGGGATTTGGCCGAGTTTATTGTGGTCTTTTGGGGGATGGAAATGAAGTTGCAGTTAAGTTGCTTACACGGGATAATCAGAATGGAGACCGTGAATTTATTGCAGAAGTTGAGATGTTGAGTAGACTGCACCATCGGAATCTTGTGAAACTGATCGGGATATGCATTGAAGGGCGAACTCGCTGCTTAGTTTATGAGCTTGTCCACAATGGAAGTGTTGAGTCTCACTTGCATGGCATTGACAAGAGAAACAGACCTCTTGACTGGGACGGACGGTTGAAGATTGCTCTTGGATCGGCAAGAGGTTTGGCATATCTTCACGAAGATTCTAATCCACGTGTTATTCACCGCGATTTTAAAGCAAGTAATGTTCTGCTGGAAGTTGACTTCACCCCCAAGGTTTCAGATTTTGGATTGGCTAGGGAAGCAACAGAAGGAAGTGAACATATCTCAACACGGGTCATGGGAACTTTCGGGTACGTAGCCCCTGAATATGCAATGACAGGGCACCTACTCGTCAAGAGTGATGTTTACAGCTATGGAGTCGTGCTACTTGAGCTTCTAACGGGAAGAAAACCGGTGGACATGTCCCAACCACAGGGCGAGGAGAATCTCGTAACATGGGCTCGGCCTCTACTGACCAGTAGAGAAGGTTTGGAGCAACTAGTAGATCCTTCTCTAGCTGGTAGTTATGACTTCGACGACATGGCCAAGGTGGCTGCCATTGCGTCTATGTGTGTTCATCCAGAGGTGACTCAGAGGCCATTTATGGGAGAAGTTGTGCAGGCTCTAAAGCTGATATACAACGACACAGACGAGACAGGTGCAGATTACTGCAGTCAAAAGGAGTCCTCCGCTCGCGACTCGGATTTCAAAGGTGATCTTGTGCCATCCGATAGCAGTTGGTGGAATGCTGGGGGCCTCACTCCTCGGCTGACATATGGTCAAGCCTCTTCATTCATCACCATGGAATACAGCTCAGGCCCGCTTGAAGATATGGAAAACCGACCGTTTTCGACTTCAAGTTTGATAGGCGATGAGATATCTTTGCCAATTCGGCATGGAAACAGGTCAGGTCCCTTACGAACCGCTCGAAGCAAGCCTGCCTTCTATAGATTCTCTGGAAGTAGGAGCGAGCATGGAGGCTTTCTTTCAAGGCCTTCTTGGAACAATGGGTTCTGGTTTTGA 2319 45.11 MPFSIAQSLLVIYAFNLLFSCSGQSSARIYLPPSSQPKLETTMTEMSTEHARSELMSFSFVSSKLHGNWMFKSSLGPSTAPAPSPGPRSAPLPIRHHRQRHIRPHVVAPAPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELEIEIAEGTYLEQSQVKIMGATADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKMHLNMTLFGDYEVVYISYPGIPSSPQYGGYMGSAPSGSAEDLPITANFVNKSKKMNIKTIAIIALSAFVVLLVFTGALFVFLKWRKVGRPSSAVGPVFTPSINKRSGLGSALSSSIASSTSVSLISTMPTSIQSVKTFSLSELEIATDKFSSKRILGEGGFGRVYCGLLGDGNEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGIDKRNRPLDWDGRLKIALGSARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGEENLVTWARPLLTSREGLEQLVDPSLAGSYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETGADYCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEDMENRPFSTSSLIGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGFLSRPSWNNGFWF 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70822313 70827764 - Sed0012307.1 Sed01g4251 703555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4251 772 FunFam receptor-like serine/threonine-protein kinase ALE2 342 444 - -
Sed01g4251 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g4251 772 SUPERFAMILY Protein kinase-like (PK-like) 347 644 IPR011009 -
Sed01g4251 772 FunFam Receptor-like serine/threonine-protein kinase ALE2 445 662 - -
Sed01g4251 772 ProSiteProfiles Protein kinase domain profile. 369 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4251 772 Pfam Protein tyrosine and serine/threonine kinase 372 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g4251 772 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524(InterPro)
Sed01g4251 772 CDD STKc_IRAK 375 644 - -
Sed01g4251 772 Gene3D Phosphorylase Kinase; domain 1 341 444 - -
Sed01g4251 772 Gene3D Transferase(Phosphotransferase) domain 1 445 667 - -
Sed01g4251 772 PANTHER OS01G0750732 PROTEIN 119 667 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4251 Sed-Chr1:70822313 Sed05g0158 Sed-Chr5:952259 0.00E+00 dispersed
Sed13g0992 Sed-Chr13:7764733 Sed01g4251 Sed-Chr1:70822313 4.10E-78 dispersed
Sed12g0493 Sed-Chr12:2921899 Sed01g4251 Sed-Chr1:70822313 6.60E-75 transposed
Sed01g4251 Sed-Chr1:70822313 Sed05g0157 Sed-Chr5:952259 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78750 PF07714 PK_Tyr_Ser-Thr 3.50E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4251 - - - 0.0