Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4255 ATGGCAGAAATGGCCTGCTCCGCGGCCGCCCTCGGCCACCTCCTCGGAAGCGCTGCAAACGCCACAGCCGCTGCCGAATACATCTGCGGCCAATTCGATGCGGTTTCGACCAAGTTTGTGGAGACGTCGTACGCCGTAGACAACACATACCTTCTGTTTTCAGCCTATCTTGTATTTGCAATGCAGCTTGGATTTGCAATGCTTTGTGCAGGCTCAGTTAGGGCCAAAAACACAATGAATATAATGCTGACCAATGTTCTTGATGCAGCCACTGGTGGCATTTTCTACTATCTATTTGGCTTTGCTTTGGCCTATGGAACTCCCTCTAATGGCTTCATTGGCCACCATTATTTTGGGCTCTCACAGTTCCCTTCTTCTTCATTTGATTATGGCTTCTTTCTGTTTCAATGGGCTTTCGCCATTGCGGCTGCTGGGATTACCAGCGGCTCGATTGCCGAACGCACCCAGTTCGTTGCCTACTTGATCTATTCCTCAGTCTTAACTGGTTTGGTTTATCCAATCGTCTCTCATTGGTTTTGGTCTTCAGATGGGTGGGGTAGTGCAGCTCGATCAGAGAATCTCTTGTTTGGCTCAGGAGTCATCGACTTCGCCGGCTCCGGCGTGGTCCACATGGTCGGCGGCATTGCTGGTCTATGGGGCGCCCTCATAGAAGGCCCTCGAATTGGTCGGTTCGACCATGCCGGTCGATCCGTCACCCTCCGTGGACATAGTGGCACACTAGTTGTTCTCGGCACTTTCCTCCTTTGGTTTGGCTGGTACGGATTCAACCCCGGTTCATTTCTCAACATCCTTAAAGCCTATGGCACCACCACCACTGCCCCATTTTACGGCCAATGGAGCGCCATTGGCCGCACTGCCGTCACCACCACTCTCGCCGGTTGCACGGCTGCACTAACCACCCTTTTCGGCAAACGCATCTTAGTCGGCCATTGGAATGTCACCGACGTCTGCAACGGCCTGTTAGGCGGATTCGCCGCCATAACATCTGGCTGCTCAGTGGTGGATCCATGGGCAGCGATCATTTGTGGGTTTTTTGCTGCCTGGGTTTTGATGGGATTGAACAAACTAGCAGAGAAAGTGAAGTACGACGATCCGTTAGAGGCGGCGCAATTGCACGGCGGGTGTGGGGCTTGGGGGATTCTGTTCACAGGCTTGTTTGCAAAACAGGCTTATGTTAACGAGATCTATCCGGGGTTGCCAGAGCGGCCATATGGGCTGCTAATGGGCGGCGGGGGGAGGCTGTTGGCAGCTCATGTAGTGCAAATCTTGTCAATTACTGGTTGGGTTAGTGTGACGATGGGGCTGGTATTTTGGCTGTTGCATAAGTTTCAGTTGCTGAGGATCAAGGCCGAGGAAGAGACGGCCGGAATGGACATGACGAGCCACGGCGGATTGGCTTATGTCTATACTGATGAAGAGAAGCCTTATGCTTGA 1455 52.71 MAEMACSAAALGHLLGSAANATAAAEYICGQFDAVSTKFVETSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYLFGFALAYGTPSNGFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVSHWFWSSDGWGSAARSENLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRSVTLRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGTTTTAPFYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILVGHWNVTDVCNGLLGGFAAITSGCSVVDPWAAIICGFFAAWVLMGLNKLAEKVKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGLPERPYGLLMGGGGRLLAAHVVQILSITGWVSVTMGLVFWLLHKFQLLRIKAEEETAGMDMTSHGGLAYVYTDEEKPYA 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70843129 70846004 - Sed0006994.1 Sed01g4255 703559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4255 484 PANTHER AMMONIUM TRANSPORTER 34 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Sed01g4255 484 NCBIfam ammonium transporter 47 474 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed01g4255 484 Gene3D Ammonium transporter AmtB like domains 26 483 IPR029020 -
Sed01g4255 484 FunFam Ammonium transporter 28 484 - -
Sed01g4255 484 SUPERFAMILY Ammonium transporter 45 455 - -
Sed01g4255 484 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed01g4255 484 Pfam Ammonium Transporter Family 50 474 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4255 Sed-Chr1:70843129 Sed11g0662 Sed-Chr11:8674279 3.90E-203 dispersed
Sed01g4255 Sed-Chr1:70843129 Sed02g1449 Sed-Chr2:50542844 6.40E-198 wgd
Sed01g4255 Sed-Chr1:70843129 Sed05g0155 Sed-Chr5:939671 2.40E-253 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4255 K03320 - csv:101223077 865.914