Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4260 ATGGATTTCAACACCCAATTGGCTTTTCTTTCAACCCTTTTTCTCTGTTTTCTTTCGCTTCAAGTTCAAGCAGATGTTTCTTCTCTTCAAACTTACATTGTTCAATTACACCCATTTGGCTCAACCAGTTCTCGTTTTGATTCTAAGCTTCAATGGCATCTTTCTTTTCTTGAACAAACTTTATCTGTTGAGGAAGACTCTGTTTCTCGCTTGCTTTATTCTTATTCTAATGCCATGGAAGGATTTGCAGCTCTGTTGTCTGAAACTGAGATTGAGTATTTGAGGAATTTGCCTGATGTTGTGGCTGTAAGAGCTGATAGAAAGCATGAAATTCAAACTACTTATTCTCATAAGTTTTTGGGGCTTAGTTTAAGCACACAAGGTGTTTGGTATAAGTCCTCAATGGGTCAAGGGTCAATTGTTGGGGTTCTTGACACTGGAGTTTGGCCTGAAAGTCCAAGCTTTGATGATTCTAAAATGCCACAAATTCCTAAAAAGTGGCAAGGAACTTGCCAAGAGGGGCAGGATTTTAATGCCTCAAGTTGCAATAGGAAACTTATTGGTGCTAAGTTCTTTATCAAAGGACATCATGCTGCTTCGTCGCCACCTTCCAATATTGTTCGGGAATATGTCTCCCCTAGAGACTCCCATGGCCATGGTACTCACACGTCTTCCACGGCTGCGGGAGCTTCGGTTGCGGATGCCAGCGTGTTCGGTAATGGAGCTGGTGTGGCACAAGGGATGGCCCCGGGAGCTCACATTGCGGTGTACAAGGTTTGCTGGTTCACTGGCTGCTATAGCTCTGATATTGTTGCAGCCATGGATTCTGCTATAAGAGATGGTGTTGACATTCTCTCCCTTTCGCTTGGTGGCTTCCCGCTTCCGTTTTTCGACGACAGTATTGCCATCGGAAGTTTTCAAGCAATGCAGCACGGTATCTCGGTTATCTGTGCAGCAGGAAACAATGGCCCAACTCAAAGTTCTGTTGCCAATGTAGCTCCTTGGATTACCACCATTGGTGCGAGCACACTCGACCGAAGGTTCCCAGCTGTAGTTCGATTGAGCAATGGAGAAGCCATTTACGGTGAATCAATGTATCCCGGAAACAAGTTCAAGCAAGCTACGAAAGAGCTTGAAGTGGTCTATTTGACTGGAGGACAAATGGGAGGTGAACTTTGCTTAAAAGGGTCTCTTCCAAGAGAACAAGTACAAGGAAAAATGGTGCTCTGCGACCGTGGTGTCAACGGAAGATCCGAAAAGGGGCAAATAGTGAAGGAATCTGGAGGAGCTGCCATGATCCTTGCGAATGCAGAGATAAATCTAGAGGAAGACTTGGTCGATGTTCATGTTTTGCCAGCCACACTGATCGGATTTACGGAGGCGAATCGGTTAAAAGCATACATAAACACCACCACTAATCCAAAAGCCAGAATCCAATTTGGAGGAACTGTGATTGGAAGATCAAGAGCTCCATCAGTAGCTCAGTTTTCATCAAGAGGACCAAGCCTCTCCAATCCTTCAACTCTTAAACCTGATGTGATTGCTCCTGGAGTCAACATTATAGCAGCTTGGCCTCAAAATCTTGGTCCAACTGGCCTTCCAGAAGATTCTAGAAGATCAAACTTCACTGTCATGTCAGGAACTTCCATGGCTTGTCCCCATGTCAGTGGAATTGCAGCTCTAATCCATTCAGCTCATCCAAAATGGACACCAGCAGCCATTAAATCAGCCATAATGACAACTGCTGAAGTTACTGATCATTTTGGTAAGCCAATTCTTGATGGTAACAAATCAGCTGGTGTTTTTGCAATGGGAGCTGGTCATGTAAACCCATCAAAAGCCATTGATCCTGGTTTGGTTTATGATATTAATCCATATGAATATGTTATTCATCTCTGTGCTCTTGGATACACCCATTCAGAAATCTTCATCATCACCCACATGAATGTGAGTTGCAATGAAGTTTTGCAGATGAACAAAGGCTTCAGCCTGAACTACCCCTCCATCTCTGTTGTTTTCAAGCATGGAACAACGAGCAAGATGGTTTCGAGACAGTTGACGAACGTGGGGAGCCCGAATTCCATCTACTCAGTGGAAGTAAGGGCACCTGAAGGAGTTCAAGTTCGAGTTAAGCCTCGGCGCTTGGTGTTCAAACATGTGAACCAAAGTTTGAATTATAAGGTATGGTTTATGTCTGAGAAGGGTAGAAAAGGAAGAAAAGTGAGCTATAAAGAAGGGCATTTGACATGGGTTCATTCTGAGAATGGAAAATACAAAGTTAGAAGCCCAATTGTGGTGACTTGGAAGAACTAA 2313 43.88 MDFNTQLAFLSTLFLCFLSLQVQADVSSLQTYIVQLHPFGSTSSRFDSKLQWHLSFLEQTLSVEEDSVSRLLYSYSNAMEGFAALLSETEIEYLRNLPDVVAVRADRKHEIQTTYSHKFLGLSLSTQGVWYKSSMGQGSIVGVLDTGVWPESPSFDDSKMPQIPKKWQGTCQEGQDFNASSCNRKLIGAKFFIKGHHAASSPPSNIVREYVSPRDSHGHGTHTSSTAAGASVADASVFGNGAGVAQGMAPGAHIAVYKVCWFTGCYSSDIVAAMDSAIRDGVDILSLSLGGFPLPFFDDSIAIGSFQAMQHGISVICAAGNNGPTQSSVANVAPWITTIGASTLDRRFPAVVRLSNGEAIYGESMYPGNKFKQATKELEVVYLTGGQMGGELCLKGSLPREQVQGKMVLCDRGVNGRSEKGQIVKESGGAAMILANAEINLEEDLVDVHVLPATLIGFTEANRLKAYINTTTNPKARIQFGGTVIGRSRAPSVAQFSSRGPSLSNPSTLKPDVIAPGVNIIAAWPQNLGPTGLPEDSRRSNFTVMSGTSMACPHVSGIAALIHSAHPKWTPAAIKSAIMTTAEVTDHFGKPILDGNKSAGVFAMGAGHVNPSKAIDPGLVYDINPYEYVIHLCALGYTHSEIFIITHMNVSCNEVLQMNKGFSLNYPSISVVFKHGTTSKMVSRQLTNVGSPNSIYSVEVRAPEGVQVRVKPRRLVFKHVNQSLNYKVWFMSEKGRKGRKVSYKEGHLTWVHSENGKYKVRSPIVVTWKN 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70893589 70896369 + Sed0021046.1 Sed01g4260 703564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4260 770 Pfam Fibronectin type-III domain 664 766 IPR041469 -
Sed01g4260 770 ProSitePatterns Serine proteases, subtilase family, serine active site. 547 557 IPR023828 -
Sed01g4260 770 CDD PA_subtilisin_like 351 478 - -
Sed01g4260 770 SUPERFAMILY Subtilisin-like 112 619 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed01g4260 770 Pfam PA domain 380 464 IPR003137 -
Sed01g4260 770 Gene3D - 345 485 - -
Sed01g4260 770 Gene3D - 632 768 - -
Sed01g4260 770 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 112 IPR037045 -
Sed01g4260 770 Pfam Subtilase family 136 585 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed01g4260 770 Gene3D Peptidase S8/S53 domain 139 628 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed01g4260 770 PRINTS Subtilisin serine protease family (S8) signature 546 562 IPR015500 -
Sed01g4260 770 PRINTS Subtilisin serine protease family (S8) signature 215 228 IPR015500 -
Sed01g4260 770 PRINTS Subtilisin serine protease family (S8) signature 136 155 IPR015500 -
Sed01g4260 770 ProSiteProfiles Serine proteases, subtilase domain profile. 114 615 - -
Sed01g4260 770 FunFam Subtilisin-like protease SBT1.5 138 359 - -
Sed01g4260 770 FunFam subtilisin-like protease SBT1.5 345 485 - -
Sed01g4260 770 CDD Peptidases_S8_3 109 582 IPR034197 -
Sed01g4260 770 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 53 765 IPR045051 -
Sed01g4260 770 MobiDBLite consensus disorder prediction 198 226 - -
Sed01g4260 770 Pfam Peptidase inhibitor I9 31 111 IPR010259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4260 Sed-Chr1:70893589 Sed09g1717 Sed-Chr9:40408908 4.50E-185 dispersed
Sed05g2894 Sed-Chr5:39932882 Sed01g4260 Sed-Chr1:70893589 1.00E-127 transposed
Sed01g4260 Sed-Chr1:70893589 Sed05g0151 Sed-Chr5:910793 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4260 - - - 0.0