Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g4260 | ATGGATTTCAACACCCAATTGGCTTTTCTTTCAACCCTTTTTCTCTGTTTTCTTTCGCTTCAAGTTCAAGCAGATGTTTCTTCTCTTCAAACTTACATTGTTCAATTACACCCATTTGGCTCAACCAGTTCTCGTTTTGATTCTAAGCTTCAATGGCATCTTTCTTTTCTTGAACAAACTTTATCTGTTGAGGAAGACTCTGTTTCTCGCTTGCTTTATTCTTATTCTAATGCCATGGAAGGATTTGCAGCTCTGTTGTCTGAAACTGAGATTGAGTATTTGAGGAATTTGCCTGATGTTGTGGCTGTAAGAGCTGATAGAAAGCATGAAATTCAAACTACTTATTCTCATAAGTTTTTGGGGCTTAGTTTAAGCACACAAGGTGTTTGGTATAAGTCCTCAATGGGTCAAGGGTCAATTGTTGGGGTTCTTGACACTGGAGTTTGGCCTGAAAGTCCAAGCTTTGATGATTCTAAAATGCCACAAATTCCTAAAAAGTGGCAAGGAACTTGCCAAGAGGGGCAGGATTTTAATGCCTCAAGTTGCAATAGGAAACTTATTGGTGCTAAGTTCTTTATCAAAGGACATCATGCTGCTTCGTCGCCACCTTCCAATATTGTTCGGGAATATGTCTCCCCTAGAGACTCCCATGGCCATGGTACTCACACGTCTTCCACGGCTGCGGGAGCTTCGGTTGCGGATGCCAGCGTGTTCGGTAATGGAGCTGGTGTGGCACAAGGGATGGCCCCGGGAGCTCACATTGCGGTGTACAAGGTTTGCTGGTTCACTGGCTGCTATAGCTCTGATATTGTTGCAGCCATGGATTCTGCTATAAGAGATGGTGTTGACATTCTCTCCCTTTCGCTTGGTGGCTTCCCGCTTCCGTTTTTCGACGACAGTATTGCCATCGGAAGTTTTCAAGCAATGCAGCACGGTATCTCGGTTATCTGTGCAGCAGGAAACAATGGCCCAACTCAAAGTTCTGTTGCCAATGTAGCTCCTTGGATTACCACCATTGGTGCGAGCACACTCGACCGAAGGTTCCCAGCTGTAGTTCGATTGAGCAATGGAGAAGCCATTTACGGTGAATCAATGTATCCCGGAAACAAGTTCAAGCAAGCTACGAAAGAGCTTGAAGTGGTCTATTTGACTGGAGGACAAATGGGAGGTGAACTTTGCTTAAAAGGGTCTCTTCCAAGAGAACAAGTACAAGGAAAAATGGTGCTCTGCGACCGTGGTGTCAACGGAAGATCCGAAAAGGGGCAAATAGTGAAGGAATCTGGAGGAGCTGCCATGATCCTTGCGAATGCAGAGATAAATCTAGAGGAAGACTTGGTCGATGTTCATGTTTTGCCAGCCACACTGATCGGATTTACGGAGGCGAATCGGTTAAAAGCATACATAAACACCACCACTAATCCAAAAGCCAGAATCCAATTTGGAGGAACTGTGATTGGAAGATCAAGAGCTCCATCAGTAGCTCAGTTTTCATCAAGAGGACCAAGCCTCTCCAATCCTTCAACTCTTAAACCTGATGTGATTGCTCCTGGAGTCAACATTATAGCAGCTTGGCCTCAAAATCTTGGTCCAACTGGCCTTCCAGAAGATTCTAGAAGATCAAACTTCACTGTCATGTCAGGAACTTCCATGGCTTGTCCCCATGTCAGTGGAATTGCAGCTCTAATCCATTCAGCTCATCCAAAATGGACACCAGCAGCCATTAAATCAGCCATAATGACAACTGCTGAAGTTACTGATCATTTTGGTAAGCCAATTCTTGATGGTAACAAATCAGCTGGTGTTTTTGCAATGGGAGCTGGTCATGTAAACCCATCAAAAGCCATTGATCCTGGTTTGGTTTATGATATTAATCCATATGAATATGTTATTCATCTCTGTGCTCTTGGATACACCCATTCAGAAATCTTCATCATCACCCACATGAATGTGAGTTGCAATGAAGTTTTGCAGATGAACAAAGGCTTCAGCCTGAACTACCCCTCCATCTCTGTTGTTTTCAAGCATGGAACAACGAGCAAGATGGTTTCGAGACAGTTGACGAACGTGGGGAGCCCGAATTCCATCTACTCAGTGGAAGTAAGGGCACCTGAAGGAGTTCAAGTTCGAGTTAAGCCTCGGCGCTTGGTGTTCAAACATGTGAACCAAAGTTTGAATTATAAGGTATGGTTTATGTCTGAGAAGGGTAGAAAAGGAAGAAAAGTGAGCTATAAAGAAGGGCATTTGACATGGGTTCATTCTGAGAATGGAAAATACAAAGTTAGAAGCCCAATTGTGGTGACTTGGAAGAACTAA | 2313 | 43.88 | MDFNTQLAFLSTLFLCFLSLQVQADVSSLQTYIVQLHPFGSTSSRFDSKLQWHLSFLEQTLSVEEDSVSRLLYSYSNAMEGFAALLSETEIEYLRNLPDVVAVRADRKHEIQTTYSHKFLGLSLSTQGVWYKSSMGQGSIVGVLDTGVWPESPSFDDSKMPQIPKKWQGTCQEGQDFNASSCNRKLIGAKFFIKGHHAASSPPSNIVREYVSPRDSHGHGTHTSSTAAGASVADASVFGNGAGVAQGMAPGAHIAVYKVCWFTGCYSSDIVAAMDSAIRDGVDILSLSLGGFPLPFFDDSIAIGSFQAMQHGISVICAAGNNGPTQSSVANVAPWITTIGASTLDRRFPAVVRLSNGEAIYGESMYPGNKFKQATKELEVVYLTGGQMGGELCLKGSLPREQVQGKMVLCDRGVNGRSEKGQIVKESGGAAMILANAEINLEEDLVDVHVLPATLIGFTEANRLKAYINTTTNPKARIQFGGTVIGRSRAPSVAQFSSRGPSLSNPSTLKPDVIAPGVNIIAAWPQNLGPTGLPEDSRRSNFTVMSGTSMACPHVSGIAALIHSAHPKWTPAAIKSAIMTTAEVTDHFGKPILDGNKSAGVFAMGAGHVNPSKAIDPGLVYDINPYEYVIHLCALGYTHSEIFIITHMNVSCNEVLQMNKGFSLNYPSISVVFKHGTTSKMVSRQLTNVGSPNSIYSVEVRAPEGVQVRVKPRRLVFKHVNQSLNYKVWFMSEKGRKGRKVSYKEGHLTWVHSENGKYKVRSPIVVTWKN | 770 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 70893589 | 70896369 | + | Sed0021046.1 | Sed01g4260 | 703564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g4260 | 770 | Pfam | Fibronectin type-III domain | 664 | 766 | IPR041469 | - | |
Sed01g4260 | 770 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 547 | 557 | IPR023828 | - | |
Sed01g4260 | 770 | CDD | PA_subtilisin_like | 351 | 478 | - | - | |
Sed01g4260 | 770 | SUPERFAMILY | Subtilisin-like | 112 | 619 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
Sed01g4260 | 770 | Pfam | PA domain | 380 | 464 | IPR003137 | - | |
Sed01g4260 | 770 | Gene3D | - | 345 | 485 | - | - | |
Sed01g4260 | 770 | Gene3D | - | 632 | 768 | - | - | |
Sed01g4260 | 770 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 18 | 112 | IPR037045 | - | |
Sed01g4260 | 770 | Pfam | Subtilase family | 136 | 585 | IPR000209 | GO:0006508(InterPro)|GO:0008236(InterPro) | |
Sed01g4260 | 770 | Gene3D | Peptidase S8/S53 domain | 139 | 628 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
Sed01g4260 | 770 | PRINTS | Subtilisin serine protease family (S8) signature | 546 | 562 | IPR015500 | - | |
Sed01g4260 | 770 | PRINTS | Subtilisin serine protease family (S8) signature | 215 | 228 | IPR015500 | - | |
Sed01g4260 | 770 | PRINTS | Subtilisin serine protease family (S8) signature | 136 | 155 | IPR015500 | - | |
Sed01g4260 | 770 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 114 | 615 | - | - | |
Sed01g4260 | 770 | FunFam | Subtilisin-like protease SBT1.5 | 138 | 359 | - | - | |
Sed01g4260 | 770 | FunFam | subtilisin-like protease SBT1.5 | 345 | 485 | - | - | |
Sed01g4260 | 770 | CDD | Peptidases_S8_3 | 109 | 582 | IPR034197 | - | |
Sed01g4260 | 770 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 53 | 765 | IPR045051 | - | |
Sed01g4260 | 770 | MobiDBLite | consensus disorder prediction | 198 | 226 | - | - | |
Sed01g4260 | 770 | Pfam | Peptidase inhibitor I9 | 31 | 111 | IPR010259 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g4260 | Sed-Chr1:70893589 | Sed09g1717 | Sed-Chr9:40408908 | 4.50E-185 | dispersed | |
Sed05g2894 | Sed-Chr5:39932882 | Sed01g4260 | Sed-Chr1:70893589 | 1.00E-127 | transposed | |
Sed01g4260 | Sed-Chr1:70893589 | Sed05g0151 | Sed-Chr5:910793 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g4260 | - | - | - | 0.0 |