Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4261 ATGAAGATGAAAACCCAGATTTTGTTTTGTGTGTTTTTGTACTATTTGATTGGTTTTTGTACTGATTGTTCTGCTTCTGTGTTAAGTGAAGAGGCTTTGGCTTTGGTTTCGTTTAAATCAGGGCTTGTTGATCCATTGAAACGGCTTGGAGATTGGAAGTTGAGCTATGGAAATGGGCACTGTAATTGGACTGGAGTTTTTTGCAATTCATTTGGAGCTGTTGAGAAATTGAGCCTTTCCCAAATGAATCTTAGCGGCATTTTGTCGAACGACTTGCGGGCACTAACAAAGCTCAGTTCTCTTGATTTGAGTTGCAATGAGTTTTCATCTTCCTTGCCTAAATCTATTGGGAATCTCACTTTCTTGAAGAGTTTTGATGTTAGTCAAAACTTTTTTGTTGGGGAGATTCCTTTGGGGTTTGGGAAAATGGTTGGATTGATGAACTTCAATGCCTCAAGCAACAATTTCTCTGGTTTAATCCCTGAAGATCTTGGAAATGCAACTCTGTTGGAGGTTTTGGATTTGAGGGGGGGTTTTCTTGAAGGGTCCATTCCTGTATCTTTTAAGAATTTGCAGAAGTTGAAGTTTCTTGGACTTTCGGGGAACAATTTGACCGGTCGAATCTCGCCCGAGGTCGGTCGGATGTCGTCGTTAGAGACGGTTATCATTGGATACAATGAGTTTGAAGGAGGGATTCCATTAGAATTTGGAAATCTCACCAATCTGAAGTATCTTGATTTGGCTGTGGGAAATCTTGGTGGTGGCATTCCTGCTGAGCTTGGGATGCTTAACAAACTTGAAACATTGTTTCTTTACAAGAACGAATTCGAAGAGCGGATTCCGTCGTCGATTGGCAATGCTACTTCATTGGTGTTTCTTGATCTTTCAGACAACAAGTTGACAGGTGAAATTCCAGTTGAGGTTGCTGAATTGAAGAATTTGCAGCTGTTGAATCTAATGCATAACAAGCTGTCTGGTGAAGTACCTCCAGGGATTGGAGGGTTGGTGAAATTACAGGTTTTAGAGCTATGGAACAACTCATTTTCAGGCCAACTACCGAGCGATCTCGGTAAGAATTCGGAGTTGGTTTGGTTGGATGTTTCATCCAATTCATTCTCTGGTCCAATTCCTGCTTCTTTATGCAATTGGGGCAATCTAACCAAGCTCATTCTTTTCAACAATGCCTTTTCTGGTCCAATTCCGATTGGATTATCGTCATGTTACTCACTCGTTCGTGTTCGAATGCAGAACAATCTGCTATCTGGTACAATCCCAGTTGGTTTTGGAAAGCTTGGGAAACTCCAATGGCTAGAATTAGCTAATAATAGTCTCACTGGCAGTATCCCAAGTGATATTTCATCTTCTAAATCTCTTTCTTTTATTGATATCTCTGGAAATTACCTTCATTCTCCTCTTCCTTACTCAATTCTTTCCATTCCAAATCTTCAACATTTTATAGTCTCTGATAATAACTTAGAAGGTGAAATTACAGACCAGTTTCAGGATTGTCCTGCACTTTCTGTTCTAGATCTCTCTTCCAACAATTTCACAGGAAGCATTCCAGAAACCATTGCTTCATGTGAGAGATTGGTAGATCTGAATCTCAGAAACAACCTGTTAACTGGAGAAATCCCAAAACAGATAGCGAATATGCCTTCACTGTCGGTTCTCGATCTATCCAATAACTCTCTTACCGGTAGAATACCTGATAATTTCGGTATCTCTCCCGCACTGGAATCGCTTAATGTCTCGTACAATAAGCTCGAGGGTCCAGTTCCATTTAATGGTGTGTTAAGAACAATCAATCCAAGTGATCTACAGGGCAATGCTGGTCTATGTGGAGCTGTCCTACCTCCATGTTCATCAAACTCAGCATTCACATCAGGGCATGGGAACTCGCACATTATCGCCAGTTGGGTCATCGGAATATCTTCTGTTTTAGCATTTGGTATTGTTCTTTTCGGTGTTATATCATCGTACAAGAGGTGGTACTCAAGTGGAAGTTGCTTTCAAGGGAGATATGAAATGGGTGGTGGAGTTTGGCCATGGAGATTGATGCAATTCCAAAGGCTTGGATTCACAAGCAATGACATTTTGGCTTGTATCAAAGATTCAAATGTAATTGGAATGGGAGCAACTGGGGTTGTGTATAAAGTTGAAATGTCACAGCTAAAGACAATTGTAGCAGTAAAAAAACTGTGGAGATCAGAAGCAGATCTTGAAATTGGAAGCAGTGAAGGTCTAGTAGGAGAAGTGAACTTACTCGGAAAGTTGAGGCACCGGAACATCGTCCGTTTACTCGGGTTTATGCATAATGATGTCGATGTAATGATCGTCTACGAGTTTATGCAAAATGGAAGCCTTGGAGAAGCCTTGCATGGTAAACAAGCAGGGAAGTTGCTTGTGGATTGGGTTTCAAGATACAACATAGCTATTGGAGTTGCACAAGGTTTATCTTATCTCCACCATGATTGCAACCCACCCATCATTCACCGTGATGTTAAGCCAAACAATATACTTCTTGATTCAAATCTTGAAGCACGGTTGGCTGATTTCGGATTGGCACGGATGATGTCTCGAAAGAACGAGACGGTTTCAGTGGTAGCTGGATCCTACGGCTACATTGCCCCTGAATATGGTTACACTTTAAAGGTTGATGAGAAGATCGACATTTACAGCTACGGCGTCGTTCTTTTAGAGCTACTGACAGGAAAGAAGCCATTAGATCCCGGGTTCGGGGAATCCGTGGACATTGTCGAATGGATAAAAAGAAAGGTCAGAAACAACAGACCTTTAGAAGAAGCACTAGATCCCAATCTTGGAAATTCCAAGCATGTTCAAGAAGAGATGTTGTTTGCTCTTAGAATAGCACTTCTATGCACTGCAAAGCATCCAAAAGAAAGACCCTCCATGAGAGACATAATAACAATGCTTGGAGAAGCAAAACCAAGGAGAAAAAGCAACAGTGGCAATGAAGGATTTGGATTTAACAAAGAGAAGAAGCCAGTTTTCAACACTTCACCTGAAAATGGTCTTCTGTAG 3042 41.19 MKMKTQILFCVFLYYLIGFCTDCSASVLSEEALALVSFKSGLVDPLKRLGDWKLSYGNGHCNWTGVFCNSFGAVEKLSLSQMNLSGILSNDLRALTKLSSLDLSCNEFSSSLPKSIGNLTFLKSFDVSQNFFVGEIPLGFGKMVGLMNFNASSNNFSGLIPEDLGNATLLEVLDLRGGFLEGSIPVSFKNLQKLKFLGLSGNNLTGRISPEVGRMSSLETVIIGYNEFEGGIPLEFGNLTNLKYLDLAVGNLGGGIPAELGMLNKLETLFLYKNEFEERIPSSIGNATSLVFLDLSDNKLTGEIPVEVAELKNLQLLNLMHNKLSGEVPPGIGGLVKLQVLELWNNSFSGQLPSDLGKNSELVWLDVSSNSFSGPIPASLCNWGNLTKLILFNNAFSGPIPIGLSSCYSLVRVRMQNNLLSGTIPVGFGKLGKLQWLELANNSLTGSIPSDISSSKSLSFIDISGNYLHSPLPYSILSIPNLQHFIVSDNNLEGEITDQFQDCPALSVLDLSSNNFTGSIPETIASCERLVDLNLRNNLLTGEIPKQIANMPSLSVLDLSNNSLTGRIPDNFGISPALESLNVSYNKLEGPVPFNGVLRTINPSDLQGNAGLCGAVLPPCSSNSAFTSGHGNSHIIASWVIGISSVLAFGIVLFGVISSYKRWYSSGSCFQGRYEMGGGVWPWRLMQFQRLGFTSNDILACIKDSNVIGMGATGVVYKVEMSQLKTIVAVKKLWRSEADLEIGSSEGLVGEVNLLGKLRHRNIVRLLGFMHNDVDVMIVYEFMQNGSLGEALHGKQAGKLLVDWVSRYNIAIGVAQGLSYLHHDCNPPIIHRDVKPNNILLDSNLEARLADFGLARMMSRKNETVSVVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLDPGFGESVDIVEWIKRKVRNNRPLEEALDPNLGNSKHVQEEMLFALRIALLCTAKHPKERPSMRDIITMLGEAKPRRKSNSGNEGFGFNKEKKPVFNTSPENGLL 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70902482 70906889 + Sed0013281.1 Sed01g4261 703565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4261 1013 PRINTS Leucine-rich repeat signature 551 564 - -
Sed01g4261 1013 PRINTS Leucine-rich repeat signature 290 303 - -
Sed01g4261 1013 Pfam Leucine rich repeat 480 540 IPR001611 GO:0005515(InterPro)
Sed01g4261 1013 Gene3D Ribonuclease Inhibitor 404 496 IPR032675 -
Sed01g4261 1013 Gene3D Ribonuclease Inhibitor 307 403 IPR032675 -
Sed01g4261 1013 Gene3D Ribonuclease Inhibitor 497 620 IPR032675 -
Sed01g4261 1013 SMART LRR_typ_2 503 527 IPR003591 -
Sed01g4261 1013 SMART LRR_typ_2 191 215 IPR003591 -
Sed01g4261 1013 SMART LRR_typ_2 95 119 IPR003591 -
Sed01g4261 1013 SMART LRR_typ_2 263 287 IPR003591 -
Sed01g4261 1013 SMART LRR_typ_2 335 359 IPR003591 -
Sed01g4261 1013 SMART LRR_typ_2 431 455 IPR003591 -
Sed01g4261 1013 SMART LRR_typ_2 551 575 IPR003591 -
Sed01g4261 1013 SMART LRR_typ_2 311 334 IPR003591 -
Sed01g4261 1013 SMART serkin_6 702 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4261 1013 SUPERFAMILY RNI-like 280 590 - -
Sed01g4261 1013 ProSiteProfiles Protein kinase domain profile. 702 985 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4261 1013 Pfam Protein kinase domain 704 975 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4261 1013 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Sed01g4261 1013 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515(InterPro)
Sed01g4261 1013 Pfam Leucine Rich Repeat 313 335 IPR001611 GO:0005515(InterPro)
Sed01g4261 1013 Pfam Leucine Rich Repeat 433 454 IPR001611 GO:0005515(InterPro)
Sed01g4261 1013 Pfam Leucine Rich Repeat 289 309 IPR001611 GO:0005515(InterPro)
Sed01g4261 1013 Pfam Leucine Rich Repeat 553 573 IPR001611 GO:0005515(InterPro)
Sed01g4261 1013 Pfam Leucine Rich Repeat 337 358 IPR001611 GO:0005515(InterPro)
Sed01g4261 1013 Pfam Leucine Rich Repeat 362 383 IPR001611 GO:0005515(InterPro)
Sed01g4261 1013 FunFam Leucine-rich repeat receptor protein kinase EMS1 280 363 - -
Sed01g4261 1013 MobiDBLite consensus disorder prediction 979 1013 - -
Sed01g4261 1013 SUPERFAMILY L domain-like 60 353 - -
Sed01g4261 1013 Gene3D Transferase(Phosphotransferase) domain 1 787 999 - -
Sed01g4261 1013 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 28 178 - -
Sed01g4261 1013 FunFam MDIS1-interacting receptor like kinase 1 787 995 - -
Sed01g4261 1013 Gene3D Ribonuclease Inhibitor 148 253 IPR032675 -
Sed01g4261 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g4261 1013 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 179 279 - -
Sed01g4261 1013 ProSitePatterns Protein kinases ATP-binding region signature. 708 732 IPR017441 GO:0005524(InterPro)
Sed01g4261 1013 FunFam MDIS1-interacting receptor like kinase 1 702 786 - -
Sed01g4261 1013 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Sed01g4261 1013 Gene3D Phosphorylase Kinase; domain 1 702 786 - -
Sed01g4261 1013 SUPERFAMILY Protein kinase-like (PK-like) 701 978 IPR011009 -
Sed01g4261 1013 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 364 624 - -
Sed01g4261 1013 Gene3D Ribonuclease Inhibitor 30 147 IPR032675 -
Sed01g4261 1013 Gene3D Ribonuclease Inhibitor 254 306 IPR032675 -
Sed01g4261 1013 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 333 982 IPR051564 GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4261 Sed-Chr1:70902482 Sed04g2043 Sed-Chr4:34819550 5.80E-84 dispersed
Sed07g1135 Sed-Chr7:8501633 Sed01g4261 Sed-Chr1:70902482 2.00E-95 transposed
Sed08g0064 Sed-Chr8:361210 Sed01g4261 Sed-Chr1:70902482 3.20E-56 transposed
Sed08g1542 Sed-Chr8:30479312 Sed01g4261 Sed-Chr1:70902482 2.70E-38 transposed
Sed01g4261 Sed-Chr1:70902482 Sed12g0413 Sed-Chr12:2490362 1.60E-78 wgd
Sed01g4261 Sed-Chr1:70902482 Sed05g0150 Sed-Chr5:901351 2.60E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78751 PF00069 Pkinase 8.60E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4261 - - - 0.0