Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4272 ATGAAATTTGTTCCTACATTTGATTCAAGGATGAAAATTCAGGCGAGTCCTGCCTTATCCGTTCCAAGTTCAAGTGCAAGGAAGCATAGTAGTGCAGGTGTAAATGAAGAAGTATCTAAATCATTAAGAGTCCTGCTGCCCACTTGTTTGGAGGAGGTATATCCCAAGTTGCCAGATTCGCAACAGGTTGCGATGGTTCGAGAGCTGGTATCAAGGCCACTGGTTCATTCCAGCCATTTACACTCTAGCAGTGGAGTGGTTGGCCATATATTTTCGTCTTCTCCAGGGTTTTCAACAGATCTCCATTACTCATCCGTTTCGTTTTATGAAAACCAATCTGATGCACCATTCATTTCGGATTCATCAGCTAATGGTGCACTGTTGCATTCTCATTCAGAACTCCTCTCATCAACGATTCATCCTACTGGTGTAAATGATAATGCCTGGTGTACGGATGCACTGCCAGGTTTTCTGGAAGCTCCTGAAAATAACCCTGCTGGCAATAGTCATGTAGAAAACAATAGTTGTAGCTCTCTTATAGTATCAGATGAATTTGGTAAAGAAAATGATTGGCGGGAATGGACGGATAGACTAATAACTGACGATTCATTGACTTCTAGTTGGAGTGACCTTCTAGTGGATGCCAATGTTGCAGATTTGGAACCAAAGATGGTGCACCAAGCATCTAAACCAGCAATAAAATTGCAAGCGCAGCCATCTCAAGTTCAAAACCAATTTCCTTCTGGGGAAATTCCTATGATTGCCACCTCAACTTCTTCTTCCAATGGAGCCCCCTCCAAACCACGGATGCGATGGACACCAGAATTACATGATGCATTTGTAGAGGCTGTAAACAAACTTGGTGGCAGTGAAAGAGCTACTCCGAAGGGTGTTCTAAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCACGTGAAGAGCCACTTGCAGAAATATAGAACGGCCAGATACCAACCAGAATCATCAAAAGGATCAATGGAGAAAAACACCACCCCGCTTGAGGACATTTCATCTCTCGATCTGAAAACGAGTATTGATATCACAGAGGCTCTACGTTTGCAGATGGAAGTTCAGAAAAAGTTACATGAACAACTTGAGATCCAGCGAAATTTACAGTTAAGAATAGAAGAACAAGGGAAGTACCTTCAGATGATGTTTGAAAAACAATGCAAGTCAAGCAACAACCTGACAAAGCCATCTGCATCCACTGTGGAGGATTCTCCATTTTCAGATCCAGTTGATGATTTCTCTGCCAAAACAGAGCTGGAAACTTCCCAGGTAGAAAATAGCACAACCCGTACTGATCCATCTGAAGCTGATACAATATCCAAAAAGGTTACGAACGAAGTAGGTGAGAAGCCAGAAGCTCATTGTAGGAAAGTCCTGGAGAATCCCGAGCCAGACATTTCAGAATCGAGCTCCCCGGTATCAAAGCGCCGAAGAACAGATTAG 1473 43.04 MKFVPTFDSRMKIQASPALSVPSSSARKHSSAGVNEEVSKSLRVLLPTCLEEVYPKLPDSQQVAMVRELVSRPLVHSSHLHSSSGVVGHIFSSSPGFSTDLHYSSVSFYENQSDAPFISDSSANGALLHSHSELLSSTIHPTGVNDNAWCTDALPGFLEAPENNPAGNSHVENNSCSSLIVSDEFGKENDWREWTDRLITDDSLTSSWSDLLVDANVADLEPKMVHQASKPAIKLQAQPSQVQNQFPSGEIPMIATSTSSSNGAPSKPRMRWTPELHDAFVEAVNKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYQPESSKGSMEKNTTPLEDISSLDLKTSIDITEALRLQMEVQKKLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSSNNLTKPSASTVEDSPFSDPVDDFSAKTELETSQVENSTTRTDPSEADTISKKVTNEVGEKPEAHCRKVLENPEPDISESSSPVSKRRRTD 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70968240 70972912 + Sed0024669.1 Sed01g4272 703576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4272 490 Pfam MYB-CC type transfactor, LHEQLE motif 353 398 IPR025756 -
Sed01g4272 490 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 174 463 IPR046955 GO:0003700(InterPro)
Sed01g4272 490 MobiDBLite consensus disorder prediction 426 444 - -
Sed01g4272 490 Gene3D - 266 325 - -
Sed01g4272 490 FunFam Myb family transcription factor 266 324 - -
Sed01g4272 490 SUPERFAMILY Homeodomain-like 265 321 IPR009057 -
Sed01g4272 490 MobiDBLite consensus disorder prediction 400 490 - -
Sed01g4272 490 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 264 324 IPR017930 -
Sed01g4272 490 MobiDBLite consensus disorder prediction 400 414 - -
Sed01g4272 490 MobiDBLite consensus disorder prediction 445 473 - -
Sed01g4272 490 Pfam Myb-like DNA-binding domain 269 320 IPR001005 -
Sed01g4272 490 NCBIfam myb-like DNA-binding domain, SHAQKYF class 267 321 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4272 Sed-Chr1:70968240 Sed01g4275 Sed-Chr1:70968240 2.90E-206 dispersed
Sed14g0820 Sed-Chr14:15844277 Sed01g4272 Sed-Chr1:70968240 8.60E-14 dispersed
Sed01g4272 Sed-Chr1:70968240 Sed01g4273 Sed-Chr1:70968240 1.10E-264 tandem
Sed06g0722 Sed-Chr6:7062865 Sed01g4272 Sed-Chr1:70968240 2.20E-75 transposed
Sed01g4272 Sed-Chr1:70968240 Sed05g0141 Sed-Chr5:850339 4.40E-194 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37450 PF00249 Myb_DNA-binding 4.80E-09 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4272 - - - 0.0