Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4273 ATGAAATTTGTTCCTACATTTGATTCAAGGATGAAAATTCAGGCGAGTCCTGCCTTATCCGTTCCAAGTTCAAGTGCAAGGAAGCATAGTAGTGCAGGTGTAAATGAAGAAGTATCTAAATCATTAAGAGTCCTGCTGCCCACTTGTTTGGAGGAGGTATATCCCAAGTTGCCAGATTCGCAACAGGTTGCGATGGTTCGAGAGCTGGTATCAAGGCCACTGGTTCATTCCAGCCATTTACACTCTAGCAGTGGAGTGGTTGGCCATATATTTTCGTCTTCTCCAGGGTTTTCAACAGATCTCCATTACTCATCCGTTTCGTTTTATGAAAACCAATCTGATGCACCATTCATTTCGGATTCATCAGCTAATGGTGCACTGTTGCATTCTCATTCAGAACTCCTCTCATCAACGATTCATCCTACTGGTGTAAATGATAATGCCTGGTGTACGGATGCACTGCCAGGTTTTCTGGAAGCTCCTGAAAATAACCCTGCTGGCAATAGTCATGTAGAAAACAATAGTTGTAGCTCTCTTATAGTATCAGATGAATTTGGTAAAGAAAATGATTGGCGGGAATGGACGGATAGACTAATAACTGACGATTCATTGACTTCTAGTTGGAGTGACCTTCTAGTGGATGCCAATGTTGCAGATTTGGAACCAAAGATGGTGCACCAAGCATCTAAACCAGCAATAAAATTGCAAGCGCAGCCATCTCAAGTTCAAAACCAATTTCCTTCTGGGGAAATTCCTATGATTGCCACCTCAACTTCTTCTTCCAATGGAGCCCCCTCCAAACCACGGATGCGATGGACACCAGAATTACATGATGCATTTGTAGAGGCTGTAAACAAACTTGGTGGCAGTGAAAGAGCTACTCCGAAGGGTGTTCTAAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCACGTGAAGAGCCACTTGCAGAAATATAGAACGGCCAGATACCAACCAGAATCATCAAAAGCAGGATCAATGGAGAAAAACACCACCCCGCTTGAGGACATTTCATCTCTCGATCTGAAAACGAGTATTGATATCACAGAGGCTCTACGTTTGCAGATGGAAGTTCAGAAAAAGTTACATGAACAACTTGAGATCCAGCGAAATTTACAGTTAAGAATAGAAGAACAAGGGAAGTACCTTCAGATGATGTTTGAAAAACAATGCAAGTCAAGCAACAACCTGACAAAGCCATCTGCATCCACTGTGGAGGATTCTCCATTTTCAGATCCAGTTGATGATTTCTCTGCCAAAACAGAGCTGGAAACTTCCCAGGTAGAAAATAGCACAACCCGTACTGATCCATCTGAAGCTGATACAATATCCAAAAAGGTTACGAACGAAGTAGGTGAGAAGCCAGAAGCTCATTGTAGGAAAGTCCTGGAGAATCCCGAGCCAGACATTTCAGAATCGAGCTCCCCGGTATCAAAGCGCCGAAGAACAGATTAG 1476 43.09 MKFVPTFDSRMKIQASPALSVPSSSARKHSSAGVNEEVSKSLRVLLPTCLEEVYPKLPDSQQVAMVRELVSRPLVHSSHLHSSSGVVGHIFSSSPGFSTDLHYSSVSFYENQSDAPFISDSSANGALLHSHSELLSSTIHPTGVNDNAWCTDALPGFLEAPENNPAGNSHVENNSCSSLIVSDEFGKENDWREWTDRLITDDSLTSSWSDLLVDANVADLEPKMVHQASKPAIKLQAQPSQVQNQFPSGEIPMIATSTSSSNGAPSKPRMRWTPELHDAFVEAVNKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYQPESSKAGSMEKNTTPLEDISSLDLKTSIDITEALRLQMEVQKKLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSSNNLTKPSASTVEDSPFSDPVDDFSAKTELETSQVENSTTRTDPSEADTISKKVTNEVGEKPEAHCRKVLENPEPDISESSSPVSKRRRTD 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70968240 70972912 + Sed0024669.2 Sed01g4273 703577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4273 491 MobiDBLite consensus disorder prediction 401 491 - -
Sed01g4273 491 Gene3D - 266 325 - -
Sed01g4273 491 MobiDBLite consensus disorder prediction 401 415 - -
Sed01g4273 491 MobiDBLite consensus disorder prediction 446 474 - -
Sed01g4273 491 FunFam Myb family transcription factor 266 324 - -
Sed01g4273 491 SUPERFAMILY Homeodomain-like 265 321 IPR009057 -
Sed01g4273 491 Pfam Myb-like DNA-binding domain 269 320 IPR001005 -
Sed01g4273 491 Pfam MYB-CC type transfactor, LHEQLE motif 354 399 IPR025756 -
Sed01g4273 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 264 324 IPR017930 -
Sed01g4273 491 MobiDBLite consensus disorder prediction 427 445 - -
Sed01g4273 491 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 174 464 IPR046955 GO:0003700(InterPro)
Sed01g4273 491 NCBIfam myb-like DNA-binding domain, SHAQKYF class 267 321 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4273 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4273 Sed-Chr1:70968240 Sed01g4275 Sed-Chr1:70968240 9.40E-205 dispersed
Sed14g1512 Sed-Chr14:23423667 Sed01g4273 Sed-Chr1:70968240 1.30E-14 dispersed
Sed01g4272 Sed-Chr1:70968240 Sed01g4273 Sed-Chr1:70968240 1.10E-264 tandem
Sed01g4273 Sed-Chr1:70968240 Sed01g4274 Sed-Chr1:70968240 1.00E-198 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT3G24120 56.4 1.3e-76 284.3
Sed02g1495 . 12 268 G2-like Transcription Factor Family AT3G24120 57.5 2.3e-68 256.9
Sed12g0381 . 12 175 G2-like Transcription Factor Family AT3G24120 73.8 8.3e-63 238.4
Sed04g3561 . 18 166 G2-like Transcription Factor Family AT3G24120 61.2 1.5e-40 164.5
Sed01g0769 . 20 165 G2-like Transcription Factor Family AT3G24120 60.9 5.8e-40 162.5
Sed05g3314 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 7.6e-40 162.2
Sed04g3560 . 18 169 G2-like Transcription Factor Family AT3G24120 59.8 9.9e-40 161.8
Sed14g1265 . 26 144 G2-like Transcription Factor Family AT3G24120 66.4 1.6e-37 154.5
Sed01g4135 . 184 368 G2-like Transcription Factor Family AT5G16560 53.5 5.4e-41 166.4
Sed01g4134 . 184 376 G2-like Transcription Factor Family AT5G16560 51.9 2.1e-40 164.5
Sed01g2622 . 11 166 G2-like Transcription Factor Family AT5G42630 60.7 9.1e-38 154.8
Sed13g1417 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1418 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1419 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1420 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed10g1420 . 1 353 G2-like Transcription Factor Family AT2G03500 57.1 1.6e-83 307.8
Sed03g1171 . 20 250 G2-like Transcription Factor Family AT1G25550 53.7 1.8e-51 200.7
Sed06g1866 . 15 251 G2-like Transcription Factor Family AT1G25550 52.5 3.5e-47 186.4
Sed03g1172 . 28 229 G2-like Transcription Factor Family AT1G25550 53.0 1.3e-41 167.9
Sed13g1417 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1418 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1419 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1420 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed14g0045 . 1 299 G2-like Transcription Factor Family AT5G05090 56.5 2.9e-75 279.6
Sed03g2144 . 1 293 G2-like Transcription Factor Family AT5G05090 56.3 7.9e-73 271.6
Sed02g0794 . 1 276 G2-like Transcription Factor Family AT5G05090 53.6 4.2e-66 249.2
Sed12g1174 . 1 252 G2-like Transcription Factor Family AT5G05090 53.9 9.7e-63 238.0
Sed02g1495 . 12 316 G2-like Transcription Factor Family AT4G13640 57.5 3.8e-60 229.6
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT4G13640 51.8 4.7e-58 222.6
Sed12g0381 . 12 141 G2-like Transcription Factor Family AT4G13640 71.8 8.3e-47 185.3
Sed01g4272 . 149 402 G2-like Transcription Factor Family AT3G04450 55.3 1.9e-54 211.1
Sed01g4273 . 149 403 G2-like Transcription Factor Family AT3G04450 54.9 9.5e-54 208.8
Sed01g4275 . 149 362 G2-like Transcription Factor Family AT3G04450 52.1 5.4e-49 193.0
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT3G24120 56.4 1.3e-76 284.3
Sed02g1495 . 12 268 G2-like Transcription Factor Family AT3G24120 57.5 2.3e-68 256.9
Sed12g0381 . 12 175 G2-like Transcription Factor Family AT3G24120 73.8 8.3e-63 238.4
Sed04g3561 . 18 166 G2-like Transcription Factor Family AT3G24120 61.2 1.5e-40 164.5
Sed01g0769 . 20 165 G2-like Transcription Factor Family AT3G24120 60.9 5.8e-40 162.5
Sed05g3314 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 7.6e-40 162.2
Sed04g3560 . 18 169 G2-like Transcription Factor Family AT3G24120 59.8 9.9e-40 161.8
Sed14g1265 . 26 144 G2-like Transcription Factor Family AT3G24120 66.4 1.6e-37 154.5
Sed08g1979 . 1 231 G2-like Transcription Factor Family AT1G69580 52.6 1.8e-45 181.0
Sed02g0909 . 47 248 G2-like Transcription Factor Family AT1G69580 53.2 3.3e-39 160.2
Sed02g0908 . 47 254 G2-like Transcription Factor Family AT1G69580 51.2 4.7e-38 156.4
Sed04g3560 . 1 346 G2-like Transcription Factor Family AT1G79430 58.0 2.5e-90 330.1
Sed04g3561 . 1 343 G2-like Transcription Factor Family AT1G79430 57.1 3.1e-88 323.2
Sed05g3314 . 1 362 G2-like Transcription Factor Family AT1G79430 53.7 4.6e-76 282.7
Sed01g0769 . 1 341 G2-like Transcription Factor Family AT1G79430 54.5 1.1e-74 278.1
Sed12g0380 . 40 206 G2-like Transcription Factor Family AT1G79430 61.7 2.8e-41 167.2
Sed02g1495 . 26 202 G2-like Transcription Factor Family AT1G79430 55.2 2.1e-36 151.0
Sed12g0381 . 40 169 G2-like Transcription Factor Family AT1G79430 60.8 2.7e-36 150.6
Sed10g0529 . 54 294 G2-like Transcription Factor Family AT2G01060 58.8 1.6e-53 207.2
Sed14g0045 . 1 299 G2-like Transcription Factor Family AT3G10760 62.7 1.3e-93 340.9
Sed03g2144 . 1 293 G2-like Transcription Factor Family AT3G10760 60.3 9.9e-89 324.7
Sed02g0794 . 1 276 G2-like Transcription Factor Family AT3G10760 54.4 5.8e-73 272.3
Sed14g0045 . 1 201 G2-like Transcription Factor Family AT2G40970 61.7 5.3e-63 238.8
Sed03g2144 . 1 186 G2-like Transcription Factor Family AT2G40970 62.1 2.6e-57 219.9
Sed02g0794 . 1 180 G2-like Transcription Factor Family AT2G40970 64.5 5.3e-55 212.2
Sed01g4275 . 181 373 G2-like Transcription Factor Family AT2G20400 51.4 5.4e-41 166.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004632 1 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37451 PF00249 Myb_DNA-binding 4.80E-09 CL0123 Sed TF